Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq180 255 8e-62 seq241 163 4e-34 seq224 104 3e-16 seq229 89.7 7e-12 >seq180 Length=182808 Score = 255 bits (282), Expect = 8e-62 Identities = 366/506 (72%), Gaps = 10/506 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||| || || ||||| ||||||||||||||| |||||| Sbjct 15123 GATCTGGCAAATGTAC-AAAAAGGCAGAAGCTTCCTTCTGGACCGCCGAGGAGATCGACC 15065 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATCA 1455891 || ||| | | |||| || | |||| | ||||| || |||||| Sbjct 15064 TCTCAAAAGACCTTCACGATTGGGACAACAAACTCAACGACAATGAGCGTCACTTCATCT 15005 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||||||| || ||||||| ||| || ||||| ||||||||| | || Sbjct 15004 CGCACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGTATCGTCAACGAGAACCTCGTCGAG 14946 Query 1455952 CGCTTTATGAAAGAGGTCCAAT-TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || || | |||||||| |||| ||||| || | || ||||| || |||||| Sbjct 14945 CGATTCAGCTCCGAGGTCCAGGCTGCC-GAGGCCCGATGCTTCTACGGCTTTCAGATCAT 14887 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || |||||||||||||| |||||||||||| || || || Sbjct 14886 GATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACACCTACATCCGTGAGCC 14827 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | || || ||||||| |||| |||| || | || || | | | ||||| Sbjct 14826 TGAACAGCGCGAGTTCCTCTTTGACGCCGTCGAGACCATTCCCGTAGTCAAGGAGAAGGC 14767 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 |||||||| | ||||||| | | || | | | || ||||||||| || ||||| Sbjct 14766 TGACTGGGCCCTTCGCTGGATCAGCGACAAGCG-CGCCAC-CTTTGCCGAACGTCTCGTT 14709 Query 1456191 GGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | |||||| | ||||||||| ||||| ||||| ||| ||| | ||||||| |||||| Sbjct 14708 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTCTGGCTC 14649 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| || |||||||||||||| Sbjct 14648 AAGAAGCGTGGTCTCATGCCCGGTCT 14623 >seq241 Length=120793 Score = 163 bits (180), Expect = 4e-34 Identities = 341/506 (67%), Gaps = 19/506 (4%) Strand=Plus/Minus Query 259679 GAGCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTAC 259738 ||||||||||| |||||| | |||||| | ||| || ||||| |||| | | Sbjct 71133 GAGCACAAGGATCAGCTCGACTCGGCCATCATCTACGAGCGCGACTTCCACTACAATTTC 71074 Query 259739 TTTGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAG 259798 |||||| | |||| | || |||||||| | | || | |||| ||| Sbjct 71073 TTTGGTTTCAAGACCCTCGAGCGCTCCTACCTCCTCCGTATCAACGGCAAGGTCGCCGAA 71014 Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858 || |||||| | |||||||||||||| || |||| || || | ||| |||| Sbjct 71013 CGTCCCCAGCACATGCTCATGCGTGTTGCTGTTGGT-ATCCACGGCCAG--GACATCGAG 70957 Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCA 259918 | ||| | ||| |||||| | ||||||||| ||| || ||| Sbjct 70956 AGTGCCATCGAG------------ACCTACAACCTCATGTCGCAAAAGTACTTTACCCAC 70909 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | ||||| ||||| || ||||| || || | ||| ||| |||||||| || || Sbjct 70908 GCTTCCCCCACCCTCTTCAACGCCGGTACTCCCCACCCACAGCTCTCGTCGTGTTTCCTC 70849 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||| ||| |||||||| ||||| || ||||| |||||| ||||| | Sbjct 70848 GTCACCATGAAGGACGACTCGATCGACGGCATTTACGACACTCTCAAGACCTGCGCCATG 70789 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||||||||| | ||||| ||||| ||| | | ||| | || | | || || Sbjct 70788 ATCTCCAAGACCGCCGGTGGCATTGGTCTCAACATCCACTGCATTCGGGGTACCGGTTCC 70729 Query 260099 TACGTGGCGGGCACCAACGGCCAGTC--CAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156 ||| | || || ||||| ||| ||| |||||| | || ||||||||||| || |||| Sbjct 70728 TACATTGCCGGTACCAATGGC--GTCAGCAACGGTATCGTACCCATGCTTCGTGTCTTTA 70671 Query 260157 ACGACACGGCGCGCTACGTCGACCAG 260182 || ||||||| ||||||||||||||| Sbjct 70670 ACAACACGGCTCGCTACGTCGACCAG 70645 Score = 96.9 bits (106), Expect = 5e-14 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| | | || | ||||||||| | |||| ||| |||||| Sbjct 70346 AGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACCCCTTCATCCTCTACA 70287 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGG-CCAAC 262210 ||||||| | ||| | | ||||||||| ||||||| ||||||| | || | ||||| Sbjct 70286 AGGACGCTGCCAATCGCAAGAGCAACCAGAAGAACCTTGGCACCATCA-AGTGCTCCAAC 70228 Query 262211 CTGTGCACCGAGATCGTCCAGT 262232 || |||||||||||| || ||| Sbjct 70227 CTCTGCACCGAGATCATCGAGT 70206 >seq224 Length=276835 Score = 104 bits (114), Expect = 3e-16 Identities = 170/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||| || ||||||||||| |||||| || | | ||| Sbjct 262197 TACTCGACCTACATCTACCGTGTCCTCAAGCAGGTTCACCCCGACACTGGT-----ATC- 262144 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | || | |||||||| ||| | ||||| | || ||||||| Sbjct 262143 TCGAACAAGGCCATGGCCATTCTCAACTCGTTCGTCCAGGACATCTTTGAGCGCATCGCT 262084 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||||| || || || ||||||| || ||| |||| |||||| Sbjct 262083 ACCGAGGCCTCCAAGCTCGCTTCCTACAACAAGAAGTCGACCATCTCGTCGCGAGAGATC 262024 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||| || || || ||| | | ||| || || ||| ||||||| |||| || || Sbjct 262023 CAGACCGCTGTTCGTCTCATCCTCCCCGGTGAGCTTTCCAAGCACGCCATCTCGGAAGGT 261964 Query 725139 ACCA 725142 |||| Sbjct 261963 ACCA 261960 >seq229 Length=127810 Score = 89.7 bits (98), Expect = 7e-12 Identities = 268/411 (65%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 332927 TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCC 332986 |||||||| | | |||| || || |||| | | |||||||| || | ||| Sbjct 41841 TTGCAGGCAAAGCAGAACCTGGTTGTGTTGGAGTAGATCTCCATGGTTCTACGCAATGCC 41782 Query 332987 TGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046 || ||||| || || || | || ||||||||||||||||||||| ||||| || | ||| Sbjct 41781 TGCTGGGCGGCGGGAGTCATGCTGTCGGCCTCGTCGAGGATGATAATCTTATGTCTACCG 41722 Query 333047 TGCGGCAGATCAACCCTTTTCGAGGCGTGGTGT-TTGATGATCTTGCGCACGACGTCCAC 333105 | || || || | ||| || ||| ||||| | || || |||||||| || Sbjct 41721 GGAGGGAGCGAGACTTTCTTCTGTGC-AAATGTCTTGATCTTGTTTCGAACGACGTCGAC 41663 Query 333106 GCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAG 333165 ||||| || || || ||||||||||| || || |||| | | || | || | || Sbjct 41662 ACCGCGTTCATCGGATGCGTTGAGTTCAAGAACCCCCTCTTTGTATGCATCGCCGAGAAG 41603 Query 333166 GACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAA 333225 | ||||| || || | |||||||| || | || || |||| | | | Sbjct 41602 CGCTCGCGCAAGACAGAGTACCGAGGTGGTCTTACCAATACCAGGAAGACCAGAAATGAG 41543 Query 333226 GAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTT 333285 ||| | || |||||||||| | | ||||| | | | || || || ||| Sbjct 41542 GAGATGCGGACAGTTGCCGTCGTTCTGAATGACTTTGAGACGGTCGATGGTGTCCTTGTT 41483 Query 333286 GCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGGGAG 333336 ||| || | |||||||| ||| || ||||||||||| | ||| || || Sbjct 41482 GCCAACGACATCGTCGAGACGCATGGGTCGGTACTTTTCTACCCAGGGAAG 41432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177787569299690