Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq199 116 3e-21 seq112 116 3e-21 seq55 102 7e-17 >seq199 Length=93844 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || ||||||||||| || || Sbjct 53694 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 53753 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | |||||||||| |||||| ||| | || Sbjct 53754 GATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 53812 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || |||||||| | ||||| || |||||||| | || |||| Sbjct 53813 TGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTAAGGGTCTTCA 53872 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 53873 CAAAGATCTGCAT 53885 >seq112 Length=308905 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||||||| || || || | || || ||||||||||| ||||| Sbjct 96351 CTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAA 96410 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||| | | |||||| ||| ||||| ||| | | | Sbjct 96411 GATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTGGCCTTGACATT 96470 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || || ||||| | ||||||||| ||||| ||||| || || || Sbjct 96471 GTCAATGGTATCAGAAGACTCGACCTCAAGCGTGATCGTCTTACCGGTCAACGTCTTGAC 96530 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 96531 AAAAATCTGCAT 96542 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| |||||| || |||||||| ||| | Sbjct 96544 CCACCACGCAGACGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 96603 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||||||||| ||||| ||||| |||||||| || | ||| Sbjct 96604 AGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGG 96663 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||| ||| ||||| ||| | | | | | |||||| || || ||| Sbjct 96664 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAACC 96723 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||||| || || || | || || ||||| || ||||| Sbjct 96724 TCCAAAGTGATCGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 96770 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 35539 CGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACC 35598 |||| |||||| || |||||||| || | | |||||| |||| || ||||||||||| Sbjct 97257 CGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGCTTACC 97316 Query 35599 CGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 ||||| ||||| ||||||||||| | ||| | | |||||| ||| ||||| ||| Sbjct 97317 AGCAAAAATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTGGCCTT 97376 Query 35659 CAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | | | | | || || || || ||||| | || || || ||||| |||| ||| Sbjct 97377 GACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTCAGAGT 97436 Query 35719 TTTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 97437 CTTTACGAAGATCTGCAT 97454 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 35539 CGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACC 35598 |||| |||||| || |||||||| || | | |||||| |||| || |||||||| || Sbjct 97029 CGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCCTCGAGCTGCTTGCC 97088 Query 35599 CGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 ||||| || | ||||||||||| | ||| | | |||||||||| ||||| ||| Sbjct 97089 GGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGCCTT 97148 Query 35659 CAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | | | | | || || || || ||||| | || || || ||||| |||| ||| Sbjct 97149 GACATTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTACCGGTCAGAGT 97208 Query 35719 TTTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 97209 CTTTACGAAAATCTGCAT 97226 >seq55 Length=29365 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| | || || | || || |||||||| || ||||| Sbjct 16250 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGTCCATCCTCGAGCTGCTTGCCTGCAAA 16309 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| || ||||||||| |||||| ||| | || Sbjct 16310 GATGAGTCGCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 16368 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||||| || || ||||| | ||||| || || || || | || || | Sbjct 16369 TGTCGATCGTGTCGGAGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTTA 16428 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 16429 CAAAGATCTGCAT 16441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792219444600