Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq112 140 3e-28 seq241 132 5e-26 seq55 125 7e-24 seq199 120 3e-22 seq8 111 2e-19 >seq112 Length=308905 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | |||||||| ||||| || ||||| || ||||||||||| Sbjct 97000 CCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 97059 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| ||||| || | ||||||||| ||||| || Sbjct 97060 AGGGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGG 97119 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | || || || || || || Sbjct 97120 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACC 97179 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| |||||||| | ||| || |||||||| ||||| Sbjct 97180 TCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAAATCTGCAT 97226 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | |||||||| ||||| || ||||| || ||||||||||| Sbjct 97228 CCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 97287 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| || || ||||||||||| |||||||| ||||| || Sbjct 97288 AGGGTTCGTCCGTCCTCGAGCTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGAGGG 97347 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | || || || || || || Sbjct 97348 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACC 97407 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| |||||||| | ||| || ||||| || ||||| Sbjct 97408 TCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 97454 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 96553 AGACGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGG 96612 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || ||||| ||||| |||||||||||||| || || || || Sbjct 96613 CCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGGATACCCTCC 96672 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | ||||| || || || || || | ||| Sbjct 96673 TTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAACCTCCAAAGTG 96732 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || || || |||||||| Sbjct 96733 ATCGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 96770 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||||||| |||||||| || ||| || || |||||||||||||| | ||| | Sbjct 96781 AGTCGCAATACGAGGTGGAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGG 96840 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| || || || ||||| | |||||||| || || || ||||| || Sbjct 96841 CCATCTTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGGGAATGCCCTCC 96900 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||||| ||| | || || || || || || || | || Sbjct 96901 TTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACTTCCAAGGTG 96960 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || || || || ||||| Sbjct 96961 ATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 96998 >seq241 Length=120793 Score = 132 bits (146), Expect = 5e-26 Identities = 556/872 (64%), Gaps = 7/872 (1%) Strand=Plus/Minus Query 7537 ATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATT 7596 ||||||||| | ||| ||||| || |||||||| |||| || || || || || Sbjct 71034 ATCAACGGCAAGGTCGCCGAACGTCCCCAGCACATGCTCATGCGTGTTGCTGTTGGTATC 70975 Query 7597 CACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT 7656 |||||| | ||||| || ||| | || || ||| | | ||||| || | ||| Sbjct 70974 CACGGCCAGGACATCGAGAGTGCCATCGAGACCTACAACCTCATGTCGCAAAAGTACTTT 70915 Query 7657 ACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGT 7716 || |||||||| |||||| | || ||| || || | || || | || |||||| Sbjct 70914 ACCCACGCTTCCCCCACCCTCTTCAACGCCGGTACTCCCCACCCACAGCTCTCGTCGTGT 70855 Query 7717 TTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTG 7775 || | | |||||| || ||| ||||||||||||||| |||| || | || || Sbjct 70854 TTCCTCGTCACCATGAAGGACGACTCGATCGACGGCATTTACGACACTCT-CAAGACCTG 70796 Query 7776 CGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAA 7835 ||||| || ||||| || ||| || || ||||| ||| | || | | || | | Sbjct 70795 CGCCATGATCTCCAAGACCGCCGGTGGCATTGGTCTCAACATCCACTGCATTCGGGGTAC 70736 Query 7836 CGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGT 7895 |||| | ||| | ||||| || || |||| | | |||||| | || || Sbjct 70735 CGGTTCCTACATTGCCGGTACCAATGGCGTCAGCAACGGTATCGTACCCATGCTTCGTGT 70676 Query 7896 GTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGC 7952 || || ||| ||| || | || |||||||| || ||||| || ||| ||| Sbjct 70675 CTTTAACAACACGGCTCGCTACGTCGACCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGC 70616 Query 7953 CATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACAT 8012 |||||| | ||||| |||||| |||| | | | | || | |||||| ||| Sbjct 70615 CATCTACATTGAGCCTTGGCACTCGGATGTCTTTGAGTTCCTCGACCTGCGTAAGAACCA 70556 Query 8013 GGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTT 8072 || || || || || || || |||| || | ||||| |||||||| || Sbjct 70555 CGGAAAGGAGGAGGTGCGTGCCCGAGAGCTCTTCTACGCCCTCTGGGTCCCCGATCTCTT 70496 Query 8073 TATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTT 8132 |||| | | ||| | ||| | |||||||||||||||||| | ||||| Sbjct 70495 CATGAAGAGGGTTGAGCAGAACGGTGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGG 70436 Query 8133 ATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGG 8192 | || ||||| ||||||| | | ||| | | ||||| ||| || Sbjct 70435 TCTCGCCGACTGCTACGGCGACGAATTTGAGCGTCTCTACGAGCGCTACGAGGCCGAGGG 70376 Query 8193 -CGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAA 8251 ||| | | ||| || || || | | || |||||| |||| | || | Sbjct 70375 TCGC-TCCAAGCGCACCGTCAAGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGA 70317 Query 8252 ACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAA 8311 ||| ||||||| || | ||| || ||||| |||||| ||| ||| ||||| || | Sbjct 70316 CCGAGACCGGTAACCCCTTCATCCTCTACAAGGACGCTGCCAATCGCAAGAGCAACCAGA 70257 Query 8312 GCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGC 8371 ||| | |||||||| ||| ||| || ||| | || || | ||||||| || | Sbjct 70256 AGAACCTTGGCACCATCAAGTGCTCCAACCTCTGCACCGAGATCATCGAGTACAGTGCCC 70197 Query 8372 CCGACGAAGTGGCCGTTTGCAATCTAGCGTCG 8403 ||||||| || ||||| ||||| || || ||| Sbjct 70196 CCGACGAGGTCGCCGTCTGCAACCTTGCCTCG 70165 >seq55 Length=29365 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || || || ||||| ||||||||||||||| Sbjct 16215 CCACCACGGAGACGAAGCACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 16274 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||||||||| || | |||||||| ||||| || Sbjct 16275 AGAGTGCGTCCATCCTCGAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGTGGA 16334 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| ||| | |||||||| || || || Sbjct 16335 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGGACTCGACC 16394 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || ||||| | || || || || || ||||| Sbjct 16395 TCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTTACAAAGATCTGCAT 16441 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || || ||||| || ||||||||||| | || | ||| ||| Sbjct 16005 ACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCCTCG 16064 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || ||||| | |||||||||||| || || |||||||| || || ||| Sbjct 16065 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGA 16124 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | ||||| || || || || || ||||| ||||| ||| Sbjct 16125 ATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTA 16184 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || || || || ||||| Sbjct 16185 CCGGTCAAAGTCTTGACAAAGATCTGCAT 16213 >seq199 Length=93844 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || ||||| ||||| || ||||||||||| | Sbjct 53659 CCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 53718 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| || || || || || | |||||||| || || || Sbjct 53719 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGA 53778 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 53779 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 53838 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| ||||| || | || || || || || ||||| ||| Sbjct 53839 TCGAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCATCTTG 53889 >seq8 Length=117649 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| || ||||||||||| Sbjct 82469 CCACCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 82410 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| || || || || |||| |||||||| ||||| || Sbjct 82409 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 82350 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | ||||| || || ||||| Sbjct 82349 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 82290 Query 134667 TCGAGAGTAATGGTTTTACCGGTT 134690 || || |||||||| ||||| ||| Sbjct 82289 TCAAGGGTAATGGTCTTACCTGTT 82266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396852217400