Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq180 98.7 1e-15 >seq180 Length=182808 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| || ||||| ||||| | || | ||||| || || ||||| Sbjct 14566 CAGGCAAAGTCGGTGTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGA 14625 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||| ||||||||||| |||||||| || |||| || || || ||||| |||||| Sbjct 14626 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAG 14685 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAG 39765 || || || || || ||||| ||||| || Sbjct 14686 ATACCCTCGACGGCAGCAAAGGCAACGAG 14714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906696341800