Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq180 95.1 4e-14 >seq180 Length=182808 Score = 95.1 bits (104), Expect = 4e-14 Identities = 354/544 (65%), Gaps = 17/544 (3%) Strand=Plus/Minus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACT- 443395 || |||||| |||||||| || ||||| || ||| | ||||||| || | ||| Sbjct 15089 TTCTGGACCGCCGAGGAGATCGACCTCTCAAAAGACCTTCACGATTGGGACAACAAACTC 15030 Query 443396 ATCTAGCCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGG 443455 | | | | |||| || | ||| || | || | |||||||| || | |||||| Sbjct 15029 AACGA-CAATGAGCGTCACTTCATCTCGCACGTCCTCGCCTTCTTCGCCGCCTCCGACGG 14971 Query 443456 TATCGTCGGTGAGAATCTGGTGACGCGTTTC---TACGAAATGGTAGTGTACACCGAGGC 443512 ||||||| ||||| || || ||| ||| | ||| ||| | ||||||| Sbjct 14970 TATCGTCAACGAGAACCTCGTCGAGCGATTCAGCTCCGA---GGTCCAGGCTGCCGAGGC 14914 Query 443513 CCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCA 443572 ||| | |||||||| || || | ||||||||||| ||| ||||| |||| | Sbjct 14913 CCGATGCTTCTACGGCTTTCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCT 14854 Query 443573 GTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCG---GTCCATCTTCTCATCGTT 443629 | ||| | || ||| |||| || |||||||| || | |||| | | Sbjct 14853 CCTCATCGACAC-CTACATCCGT--GAGCCTGAACAGCGCGAGTTCCTCTTTGACGCCGT 14797 Query 443630 CATGACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGA 443689 | ||||| || | ||| || ||| || |||||| | ||| || | ||| | Sbjct 14796 CGAGACCATTCCCGTAGTCAAGGAGAAGGCTGACTGGGCCCTTCGCTGGATC-AGCGACA 14738 Query 443690 AAATCTC-AGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTA 443748 | | | | ||| | ||| || || || || ||||||| ||||| || | || || Sbjct 14737 AGCGCGCCACCTTTGCCGAACGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCT 14678 Query 443749 GCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACC 443808 ||| | || ||||||||||||||| | || |||||||| || |||| |||||| ||| Sbjct 14677 CTGGCT-CGTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACC 14619 Query 443809 TTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTC 443868 || ||||| || ||| || || || || | || |||||| |||||||| ||| Sbjct 14618 TTCTCCAACGAGCTCATCTCCCGTGATGAAGGCCTTCACACCGACTTTGCCTGTCTCCTC 14559 Query 443869 TACA 443872 | || Sbjct 14558 TTCA 14555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588331014114025