Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq241 203 4e-47 seq180 111 2e-19 seq200 96.9 4e-15 >seq241 Length=120793 Score = 203 bits (224), Expect = 4e-47 Identities = 831/1297 (64%), Gaps = 25/1297 (2%) Strand=Plus/Plus Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 |||||||||| |||||||| | || || || ||||| || || || |||| || |||| Sbjct 69792 CCCACATGTCGTACTGAAGCTCACCCTGCGAAGCGGGCGAGCCGGCATAGGTCTCGTAGG 69851 Query 110928 AACCTTGGGCTTCAGCCAATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCA 110986 || || | | ||||| || || | |||| || |||| ||||| || ||||| ||| Sbjct 69852 TGCCGTGCTCCTGAGCCAGCTCGCACGATCGC-TCGAGGGCGGCGTGGTAGATGGTCTCA 69910 Query 110987 AAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA 111046 ||||| || |||| | || || || ||||| ||||||| | || Sbjct 69911 AAGATCTGAACATTAAGACGACGAGCCTCGGGCGACTCAAAGGCGTAGCCCATGATCATG 69970 Query 111047 AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 111106 || | || |||||||| || ||||| | ||| || || | ||| ||||| || ||| | Sbjct 69971 AAGGCGTCAGCGAGACCCTGGACACCGATACCGATGGGACGGTGACGCATGTTGGACCTG 70030 Query 111107 CGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA 111166 || || ||| |||||||| | || |||| |||| ||| | || ||| | Sbjct 70031 CGAGCCTCCTCGACGGGATAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATG 70090 Query 111167 ATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATAC 111226 ||| | || || || || | |||| | | || | | || | | Sbjct 70091 GCCTTGGCGACCTCGTGGAGACGCTTGAAATCGTAGATTTTGGTGACGGGGTCGATAAAG 70150 Query 111227 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 111286 | || || ||||| || || | ||||| || || ||| || | ||||||| Sbjct 70151 GTGGGGAGAGCGATCGAGGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCACTGTACTCG 70210 Query 111287 AAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | || || || || | |||||| | ||| || || || | ||||| ||||| ||||| Sbjct 70211 ATGATCTCGGTGCAGAGGTTGGAGCACTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTG 70270 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 ||| || ||||||||||| ||| |||| | || ||||| ||||| || | ||| Sbjct 70271 CGATTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGG 70330 Query 111407 ATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTA 111465 || || | ||| | | || | | || | || || |||| || ||||| |||||||| Sbjct 70331 ATGGCGTACCAGAGCTTCTGGGCCTTG-ACGGTGCGCTTGGAGCGACCCTCGGCCTCGTA 70389 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525 |||||| ||||| || || || ||||| |||||| || || || Sbjct 70390 GCGCTCGTAGAGACGCTCAAATTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTT 70449 Query 111526 TGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 111585 || || | || ||||| | ||| | |||||||| ||||||||| || || || | Sbjct 70450 GGGGCACATGAGCGACCAGTCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGGAC 70509 Query 111586 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 ||| |||| | ||||| |||| || |||| || | || ||||| || | Sbjct 70510 CCAGAGGGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTTCCGTGGTTCTTACGCAG 70569 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 || |||||||| | || ||||| |||||| ||||||| |||| || | | || Sbjct 70570 GTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACC--- 70626 Query 111706 TCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 ||||| ||| | || | || ||||| || ||| |||||| || |||||||| Sbjct 70627 AGGACGCTTGTTACCACCCTGGTCGACGTAGCGAGCCGTGTTGTTAAAGACACGAAGCAT 70686 Query 111760 TGGAATAATACCAT--CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG--CTC 111815 || | ||||| | |||| ||||| || || ||| || | || | | Sbjct 70687 GGGTACGATACCGTTGCTGA--CGCCATTGGTACCGGCAATGTAGGA---ACCGGTACCC 70741 Query 111816 TCACATCA-TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 111874 | || ||||||| | ||||| || || || ||| ||||| || || | Sbjct 70742 CGAATGCAGTGGATGTTGAGACCAATGCCACCGGCGGTCTTGGAGATCATGGCGCAGGTC 70801 Query 111875 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 111934 | ||||| | || || |||| ||| ||||| ||||| ||| || ||||| || Sbjct 70802 TTGAGAGTGTCGTAAATGCCGTCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGAC 70861 Query 111935 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 111994 || | ||| || || ||||| || ||||||||||| || | ||||| | || || Sbjct 70862 GAGAGCTGTGGGTGGGGAGTACCGGCGTTGAAGAGGGTGGGGGAAGCGTGGGT-AAAGTA 70920 Query 111995 C-CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053 | ||| ||||| || ||| ||||| | | || || ||||| | |||||||| || Sbjct 70921 CTTTTGCGACATGAGGTTGTAGGTCTCGATGGCACTCTCGATGTCCTGGCCGTGGATACC 70980 Query 112054 GATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTG 112113 | || || ||||||| ||||| ||| || ||| || |||| | || || | Sbjct 70981 AACAGCAACACGCATGAGCATGTGCTGGGGACGTTCGGCGACCTTGCCGTTGATACGGAG 71040 Query 112114 AAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAA 112150 || ||| ||| ||||| |||| ||||||| || Sbjct 71041 GAGGTAGGAGCGCTCGAGGGTCTTGAAACCAAAGAAA 71077 >seq180 Length=182808 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| || || ||||| ||||| || || || || |||||| ||||| Sbjct 14568 GGCAAAGTCGGTGTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACC 14627 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | ||| || || ||||||||||| Sbjct 14628 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGAT 14687 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 |||||| || ||||| |||| || |||||||| |||| Sbjct 14688 ACCCTCGACGGCAGCAAAGGCAACGAGACGTTCGGCAAAGG 14728 >seq200 Length=338114 Score = 96.9 bits (106), Expect = 4e-15 Identities = 259/387 (67%), Gaps = 12/387 (3%) Strand=Plus/Minus Query 182513 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 182572 ||||||||||||||| || |||||||| | ||| ||| ||||| ||||| | || || Sbjct 73224 GATGAGACCCTTGATATGCGAACCATCGTGATCCTGATCGGTCATGATCATGACACTGCC 73165 Query 182573 ATAGCG-AAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCAAGGATCTTCT 182631 || || ||| | || || | || | ||| || || || ||||| || |||| || Sbjct 73164 GTAACGCAAGCT-GTTGACGTCAAGATACTGTTTGCCGTGCTGGAGACCGAGAATCTCCT 73106 Query 182632 TGAGATCATTGAACTC--CTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATT 182689 ||| | |||| ||| | || ||| | ||| | || || || |||||||| Sbjct 73105 TGATGGCTTTGATCTCAGCATTCTTCATG--ATCTGATCGTGAGAGGCCTCACGAACATT 73048 Query 182690 CTTACATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACC 182749 | ||||| ||||| ||||| |||||||| | || | || || | || ||| Sbjct 73047 GAGAAGCTTACCTCGAAGCGGGAAGACACCGTAATTGTCTCTTCCTACCTCGACGATACC 72988 Query 182750 CGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACA--CTTTCCA 182807 | || ||||| || || || || ||||| || |||| ||||| ||||| | || Sbjct 72987 GGACACGGCGAGCGTCTTGGCAGAGTCACCTTCGGTGAGGATGAGCGTACAGTCCTTGGC 72928 Query 182808 GATTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACCGGTAATTTTGG-A 182866 | |||| ||| || ||||| ||||| || | |||||| || ||| || ||| | Sbjct 72927 CTTCCTGCC--ACCAGCATTGTTGGCGTCCTCGAGCTTGGGGATGTTGGTGATCCTGGTA 72870 Query 182867 CTTGCGAGCACCATCGGTCTTCTTGAG 182893 | | | | || |||||||||||||| Sbjct 72869 CGTTTGTG-TCCGTCGGTCTTCTTGAG 72844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030076652000