Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq241 237 2e-57 seq180 123 3e-23 seq200 87.8 2e-12 >seq241 Length=120793 Score = 237 bits (262), Expect = 2e-57 Identities = 1138/1786 (64%), Gaps = 55/1786 (3%) Strand=Plus/Plus Query 117801 AGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTG 117860 ||| | |||||||| | || | | || ||| | ||||||||||| | || |||||| Sbjct 69251 AGGGTAAACTGAATAGCGCTGGACGCGGGCTTGGTACGGAGGTAGTAAGTTCCAGTCTTG 69310 Query 117861 AGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCC 117920 ||||||| |||||| | || | ||||| |||| | || || ||| ||| | Sbjct 69311 AGCCCCTTCTTCCAACCGTAAAAGTGCATCGAGGTGAGCTGACCGAAGGTGGGAGCTGAA 69370 Query 117921 ATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCA 117980 | | || ||| | || || || |||||| || || || || ||||| ||| Sbjct 69371 AGGTGGATGTTGAGCGACTGAGACTGGCAGATGAATGCACCTCGGTCGGCAGCCATGTCA 69430 Query 117981 ATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGG 118040 || | ||||| |||| ||||| || ||| ||||||| ||||| ||| || ||| Sbjct 69431 ATGATGGCCTTCTGGCTGATCTCCCATACGGTCTTGTAGAGCTTCTTGATACGGTCGGGG 69490 Query 118041 ATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATA--- 118094 || | | || ||||| || ||||| | | | |||| | | |||||| Sbjct 69491 ATGCCGGGAACGTTCTGGATCGAACCACCG---TGGGCAATGATGCGGTTCTTCATGGTG 69547 Query 118095 TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTT---ATTGACAACA 118151 || || ||| | ||| || ||| ||| ||| | |||||| || Sbjct 69548 TCGTT---CCACAAACCTTGCTCAACGAG---CTCGCGGAGCAACCAGGGATTGACCACC 69601 Query 118152 ACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCA 118210 ||||| || ||||| || | ||| || || |||| ||||| || |||||||| Sbjct 69602 TGGAACTCGCCGGCGAGTACACGACG-AGAGTAAATGTTGGAAGTGTAAGGTTCAAAGCA 69660 Query 118211 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 118270 ||| ||| ||| | || || ||| ||||| || ||||| || || | ||| || Sbjct 69661 CTCGTTGAAACCGAGAATCTGACTTGTAGAGGCGGTAGGCATCGGGGCGAGGAGGAGCGA 69720 Query 118271 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTG----- 118325 || || ||||| | | ||| ||||||| || ||||||| || | Sbjct 69721 ATTGCGCAGACCGTGCTTGGCAATCTTGGCCTTGAGGCCGGCCCAGTCCCAGAGGTCCGA 69780 Query 118326 AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCC 118385 || || | |||| |||| || |||| || ||| || || || ||||| || Sbjct 69781 AGGGGTGACACCCC-----ACATGTCGTACTGAAGCTCACCCTGCGAAGCGGGCGAGCCG 69835 Query 118386 TCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGC 118444 || | ||||| || | ||| | ||| |||| ||| | | |||| |||||||| || Sbjct 69836 GCATAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGC-TCGAGGGCGGC 69894 Query 118445 GTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGC 118504 ||| || || || ||||| || || |||| | |||||| || ||||| || Sbjct 69895 GTGGTAGATGGTCTCAAAGATCTGAACATTAAGACGACGAGCCTCGGGCGACTCAAAGGC 69954 Query 118505 G-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGA 118562 | || | || | || || | || |||||||| |||||||||| || || || || Sbjct 69955 GTAGCC--CATGATCATGAAGGCGTCAGCGAGACCCTGGACACCGATACCGATGGGACGG 70012 Query 118563 TGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTA 118622 || | ||| || ||| | ||||| ||| |||||||| | || | ||||| | | | Sbjct 70013 TGACGCATGTTGGACCTGCGAGCCTCCTCGACGGGATAGTAGTTGATGTCGATGATCTTG 70072 Query 118623 TTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGA 118682 || | || ||| || |||| | || || || || | | |||| | | Sbjct 70073 TTCAAGTTCTTGCAGATGGCCTTGGCGACCTCGTGGAGACGCTTGAAATCGTAGATTTTG 70132 Query 118683 GTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCA 118742 || | | || | | | || || ||||| || || || || || || | | ||| Sbjct 70133 GTGACGGGGTCGATAAAGGTGGGGAGAGCGATCGAGGCAAGGTTGCAGACGGCGACCTCG 70192 Query 118743 TCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAG 118802 || || ||||||| || || || ||||| | ||| || | ||| |||||||| | | Sbjct 70193 TCGGGGGCACTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCACTTGATGGTGCCAAGG 70252 Query 118803 TTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTC 118862 ||||| || || ||| || || |||||||| || ||| | || | || ||| Sbjct 70253 TTCTTCTGGTTGCTCTTGCGATTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCGGTC 70312 Query 118863 TCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGC 118921 || || || |||| ||| || || | ||||| | || | || | || ||| |||| Sbjct 70313 TCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTG-ACGGTGCGCTTGGA 70371 Query 118922 TCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGA 118981 || ||||| ||||||| |||||| ||||| || || || | || | Sbjct 70372 GCGACCCTCGGCCTCGTAGCGCTCGTAGAGACGCTCAAATTCGTCGCCGTAGCAGTCGGC 70431 Query 118982 GAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 119041 ||| || || || | ||||| | ||| ||||| | ||| || |||||||| ||| Sbjct 70432 GAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCACCGTTCTGCTCAACCCTCTT 70491 Query 119042 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 119101 ||||||||| || |||| |||||| || ||||||| || || || | || || | Sbjct 70492 CATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTT 70551 Query 119102 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 119161 || || || ||||| || | || || | || ||||| |||||| || || | ||| Sbjct 70552 TCCGTGGTTCTTACGCAGGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTA 70611 Query 119162 CACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGC 119215 | || | | || | |||| |||| |||||| || || | || ||| Sbjct 70612 GATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGGTCGACGTAGCGAGCCGTGTT 70668 Query 119216 GTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TA 119273 |||||| ||||||||||| || | |||||| | | |||||| || || || || Sbjct 70669 GTTAAAGACACGAAGCATGGGTACGATACCGTTGCTGACGCCATTGGTACCGGCAATGTA 70728 Query 119274 CGAGACTTATTGGCTCTGACATC-GTGGATGTGCATACCAATACCCCCTGCCCACTTTGA 119332 || || | | | || | |||||||| | |||||| || || || ||| || Sbjct 70729 GGA-ACCGGT--ACCCCGAATGCAGTGGATGTTGAGACCAATGCCACCGGCGGTCTTGGA 70785 Query 119333 GATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGC 119392 ||| ||||| | ||||| || |||| || || ||||||||||| |||| | | Sbjct 70786 GATCATGGCGCAGGTCTTGAGAGTGTCGTAAATGCCGTCGATCGAGTCGTCCTTCATGGT 70845 Query 119393 GATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGT 119452 || |||||| || ||| | || || ||| ||||| ||||||||||| || || | Sbjct 70846 GACGAGGAAACACGACGAGAGCTGTGGGTGGGGAGTACCGGCGTTGAAGAGGGTGGGGGA 70905 Query 119453 CGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGT 119511 |||||| | || ||| ||| ||||| || ||||||||| | | | |||| Sbjct 70906 AGCGTGGGT-AAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCACTCTCGATGT 70964 Query 119512 CTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 | | ||||| ||||| | | || ||||| | ||||| ||||| Sbjct 70965 CCTGGCCGTGGATACCAACAGCAACACGCATGAGCATGTGCTGGGG 71010 >seq180 Length=182808 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || || || |||||||||||||| || || |||||| ||||| Sbjct 14568 GGCAAAGTCGGTGTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACC 14627 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | || ||||||||||||||||| Sbjct 14628 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGAT 14687 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| || || || |||| |||||| || ||||||| Sbjct 14688 ACCCTCGACGGCAGCAAAGGCAACGAGACGTTCGGCAAAGG 14728 >seq200 Length=338114 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/160 (73%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 180845 TCACGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTC 180904 || ||| || ||||| | ||| |||||||| | | |||||||||||| || || || Sbjct 72058 TCTCGACGGTGAACTCGGTAGAGTAGATGTTGGCGAGCTTGGCACCGTAACCGTT---TC 72002 Query 180905 CACCAACAATTCTCTT---CTTGTTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAA 180961 |||| | | ||| || |||||| |||||||| | ||||| |||||||||| Sbjct 72001 TACCACCGGTGACCTTGGCCTCGTTGTCGTCGTAGTTGGACGAGGTGAGAAGGTGACCAA 71942 Query 180962 AGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTGCAT 181001 || | || |||||| | ||| | ||||||||||||||| Sbjct 71941 AGATGAGCTCTGGAATGTAAACCTTCTCCTTTTCGTGCAT 71902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433306042200