Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq241 271 9e-68 seq200 140 4e-28 seq180 136 5e-27 >seq241 Length=120793 Score = 271 bits (300), Expect = 9e-68 Identities = 912/1399 (65%), Gaps = 43/1399 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || | ||||| || || | ||||| || || | Sbjct 71010 CCCCAGCACATGCTCATGCGTGTTGCTGTTGGTATCCACGGCCAGGACATCGAGAGTGCC 70951 Query 104282 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||| ||| ||| || | ||||| | || |||||||| Sbjct 70950 ATCGAGACCTACAACCTCATGTCGCAAAAGTACTTT-ACCCACGCTTCCCCCACCCTCTT 70892 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || ||||| || || || | || || ||||| || ||| ||||| || Sbjct 70891 CAACGCCGGTACTCCCCACCCACAGCTCTCGTCGTGTTTCCTCGTCACCATGAAGGACGA 70832 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| |||| || || | ||||| | | || || ||||| ||| || || Sbjct 70831 CTCGATCGACGGCATTTACGACACTCTCAAGACCTGCGCCATGATCTCCAAGACCGCCGG 70772 Query 104461 GGGTATTGGGATGCACATCCA-TGATGTGAGAG--CCAATAAATCTCGTATTCGGGGGAC 104517 || ||||| | ||||||| || | | | || | || ||| || || Sbjct 70771 TGGCATTGGTCTCAACATCCACTGCATTCGGGGTACCGGT---TCCTACATTGCCGGTAC 70715 Query 104518 AAATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 ||||| |||| | ||||| | || |||||||| || |||||| ||| || ||| Sbjct 70714 CAATGGCG--TCAGCAACGGTATCGTACCCATGCTTCGTGTCTTTAACAACACGGCTCGC 70657 Query 104576 TATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 || || | || | ||| ||||| || | | || |||| ||||||| Sbjct 70656 TACGTCGACCAGGGTGGTAACAAGCGTCCT---GGTGCCTTTGCCATCTACATTGAGCCT 70600 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 |||||| ||||| || | |||||||| || ||||| ||||| || | ||||||| | Sbjct 70599 TGGCACTCGGATGTCTTTGAGTTCCTCGACCTGCGTAAGAACCACGGAAAGGAGGAGGTG 70540 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || ||| || ||||||| ||| |||||| | || ||||||||||||||||| |||||| Sbjct 70539 CGTGCCCGAGAGCTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTTGAG 70480 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| || | ||||| ||| | || || || || || |||||| |||| | Sbjct 70479 CAGAACGGTGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACTGCTAC 70420 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-AC 104868 || || || ||||| || ||| ||||||| || ||||| | | ||| || Sbjct 70419 GGCGACGAATTTGAGCGTCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCAA-GCGCAC 70361 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || | || | || | | ||| | || || ||| |||| || |||||||| |||| | Sbjct 70360 CGT-CAAGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACC 70302 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | ||| || ||||| ||||| || | ||||| || || ||||| | || | Sbjct 70301 CCTTCATCCTCTACAAGGACGCTGCCAATCGCAAGAGCAACCAGAAGAACCTTGGCACCA 70242 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 ||||| | ||||| ||||| || || ||| | || | | | | || ||| || | Sbjct 70241 TCAAGTGCTCCAACCTCTGCACCGAGATCATCGAGTACAGTGCCCCCGACGAGGTCGCCG 70182 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 | || ||||| || || ||||||||||||| | | | || || | || || | | | Sbjct 70181 TCTGCAACCTTGCCTCGATCGCTCTCCCCACCTTTATCGACCCCGTCACCAAAATCTACG 70122 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 ||| | |||||||| || | || | || ||| ||| | |||| | || | Sbjct 70121 ATTTCAAGCGTCTCCACGAGGTCGCCAAGGCCATCTGCAAGAACTTGAACAAGATCATCG 70062 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | | || | || ||||| ||| ||||| | || || ||| | |||||||| || | Sbjct 70061 ACATCAACTACTATCCCGTCGAGGAGGCTCGCAGGTCCAACATGCGTCACCGTCCCATCG 70002 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTC 105285 || ||||||| ||||||||||| || | ||||| || | | || |||| ||||| || Sbjct 70001 GTATCGGTGTCCAGGGTCTCGCTGACGCCTTCATGATCATGG--GCTACGCCTTTGAGTC 69944 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 ||| || | |||| | || ||||||||||| || |||||||| || || Sbjct 69943 GCCCGAGGCTCGTCGTCTTAATGTTCAGATCTTTGAGACCATCTACCACGCCGCCCTCGA 69884 Query 105346 GGCGA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 |||| || | ||| |||| ||| | || | || || |||| || || || || Sbjct 69883 -GCGATCGTGC-GAGCTGGCTCAGGAGCACGGCACCTACGAGACCTATGCCGGCTCGCCC 69826 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTT-----CACT 105458 ||||| || || | |||||| | || |||||| |||| ||| ||| | || Sbjct 69825 GCTTCGCAGGGTGAGCTTCAGTACGACATGTGG---GGTGTCACC--CCTTCGGACCTCT 69771 Query 105459 ACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 ||||||| | ||||||| || || | ||||| || || |||||| Sbjct 69770 GGGACTGGGCCGGCCTCAAGGCCAAGATTGCCAAGCACGGTCTGCGCAATTCGCTCCTCC 69711 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 | || || ||||| || ||||| || || || | ||| || || |||||||||| Sbjct 69710 TCGCCCCGATGCCTACCGCCTCTACAAGTCAGATTCTCGGTTTCAACGAGTGCTTTGAAC 69651 Query 105579 CCTACACGACGAACATCTA 105597 | ||||| | ||||| || Sbjct 69650 CTTACACTTCCAACATTTA 69632 >seq200 Length=338114 Score = 140 bits (154), Expect = 4e-28 Identities = 209/294 (71%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| |||||||||||||| || ||||| |||| ||| ||| ||||||||||||| | Sbjct 73229 TTGATGATGAGACCCTTGATATGCGAACCATCGTGATCCTGATCGGTCATGATCATGACA 73170 Query 169220 CGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGAT 169278 | || || || ||||| | || || |||| | || || || || ||||| | || Sbjct 73169 CTGCCGTAACGCAAGCT-GTTGACGTCAAGATACTGTTTGCCGTGCTGGAGACCGAGAAT 73111 Query 169279 CTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAAC 169338 || ||||| | |||| ||| || ||| ||| | |||||| || ||||| Sbjct 73110 CTCCTTGATGGCTTTGATCTCAGCATTCTTCATGATCTGATCGTGAGAGGCCTCACGAAC 73051 Query 169339 ATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAG 169398 ||| | ||| || ||||| |||||||||||||| | || | || || || || Sbjct 73050 ATTGAGAAGCTTACCTCGAAGCGGGAAGACACCGTAATTGTCTCTTCCTACCTCGACGAT 72991 Query 169399 ACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 ||| | || ||||| ||||| || |||||||| ||||||| |||||||||||| Sbjct 72990 ACCGGACACGGCGAGCGTCTTGGCAGAGTCACCTTCGGTGAGGATGAGCGTACA 72937 >seq180 Length=182808 Score = 136 bits (150), Expect = 5e-27 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| || || ||| | || ||||| || |||||||||||||||||||| || | Sbjct 14728 CCTTTGCCGAACGTCTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGT 14669 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 || | | || | |||||||||||||| ||||||||||| |||||| ||||||||||| Sbjct 14668 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACG 14609 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| ||||| ||||| || || || ||| || ||||| Sbjct 14608 AGCTCATCTCCCGTGATGAAGGCCTTCACACCGACTTTGC 14569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259013763800