Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq112 174 5e-38 seq113 172 2e-37 seq55 143 8e-29 seq8 95.1 4e-14 >seq112 Length=308905 Score = 174 bits (192), Expect = 5e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | || ||||| || ||||| |||||||| || || || || || || Sbjct 96996 CATACCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTC 97055 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || || || || || || |||||||| ||||| ||||| || || Sbjct 97056 CGAGAGGGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 97115 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || || || ||||| ||||| | |||||| | || Sbjct 97116 AGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTC 97175 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| |||| ||||| ||||| || || ||||| ||||||||||| Sbjct 97176 GACCTCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAAATCTGCAT 97226 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | || ||||| || ||||| |||||||| || || || || || || Sbjct 97224 CATACCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTC 97283 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || || || || || |||||||| || | || ||||| || || Sbjct 97284 CGAGAGGGTTCGTCCGTCCTCGAGCTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGG 97343 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || ||||||||||| || || || ||||| ||||| | |||||| | || Sbjct 97344 AGGGATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTC 97403 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| |||| ||||| ||||| || || ||||| || |||||||| Sbjct 97404 GACCTCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 97454 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | || | || || || || || |||||| ||||| || | Sbjct 96764 TTTGCATACCACCGCGAAGTCGCAATACGAGGTGGAGGGTGCTCTCTTTCTGAATGTTGT 96823 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || |||||||| || || ||||| || || || || || ||||| | Sbjct 96824 AGTCAGACAGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGT 96883 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| || || ||||||||||| || || || ||||| ||||| | |||||| | Sbjct 96884 CAGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAG 96943 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | || | ||||| ||||| || || || ||||| |||||||| Sbjct 96944 ACTCGACTTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 96998 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 ||||| ||||| || ||||| || || || || ||||| | || || ||||| || Sbjct 96334 ACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCTCAGCGTACGGCCATCCTCG 96393 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 || || || ||||||||||| | || ||||| || ||||| || || || ||||||||| Sbjct 96394 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGA 96453 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || || || || ||||| ||||| | |||||| | || || ||||| || | ||||| Sbjct 96454 ATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACCTCAAGCGTGATCGTCTTA 96513 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| | || || |||||||||||||| Sbjct 96514 CCGGTCAACGTCTTGACAAAAATCTGCAT 96542 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || ||||| || ||||| || || || || || || Sbjct 96540 CATACCACCACGCAGACGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTC 96599 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || |||||||| || || ||||||||||| | || |||||||| || Sbjct 96600 GCTCAGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGG 96659 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || ||||||||||| || || || ||||| || |||| || || | || Sbjct 96660 AGGGATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTC 96719 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || | || | |||||||| || ||||| || ||||| || ||||| Sbjct 96720 AACCTCCAAAGTGATCGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 96770 >seq113 Length=137664 Score = 172 bits (190), Expect = 2e-37 Identities = 583/904 (64%), Gaps = 13/904 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | |||||||| || || ||||| || |||||||| ||||| ||| Sbjct 120051 GCCATCGGTATCGATCTCGGTACTACCTACTCCTGTGTCGCCGTTTGGCAGAATGACCGT 120110 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || | || || || || || |||||| | || || || ||||| || || || || Sbjct 120111 GTCGAGGTTATCGCCAACGACCAGGGTAACCGTACCACTCCTTCATATGTCGCCTTCACT 120170 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| | || || ||| |||| || || || | || || || | ||| Sbjct 120171 GATTCAGAGCGTCTCATCGGAGATGCTGCCAAGAACCAGGTCGCCATGAACCCTCACAAT 120230 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACA 349434 || || || || || ||||| || || ||| | | || |||| | || || Sbjct 120231 ACCGTCTTCGACGCCAAGCGTCTCATCGGTCGCAAGTTCGATGACGCCGAGGTC----CA 120286 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 || ||| | || || | || || | || | | ||||| || || || Sbjct 120287 GTCCGATATGAAGCACTGGCCATTC---GAGGTCACCTCCGTCGGTGGCAAGCCCCAGAT 120343 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 | || || || ||||| | || || |||||||| || || || ||||| Sbjct 120344 CCGCATCGAGTACAAGGGTGAGAAGAAGACCTTCACCCCCGAAGAGATCTCCTCCATGGT 120403 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | | || ||| || | || || || || | || | || || | || || || Sbjct 120404 CCTCCTCAAGATGCGCGAGACCGCCGAGGCCTACCTCGGCGGCACCGTCAAGGACGCCGT 120463 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | ||||| || || || || || || | |||||| || || || ||||| || | Sbjct 120464 CGTCACTGTCCCCGCTTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGATGCCGGTAT 120523 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| |||| | || ||| | |||| ||||| || ||||| || || || || || || Sbjct 120524 CATCTCGGGTCTCAACGTTATGCGAATCATTAACGAGCCCACCGCCGCCGCCATCGCTTA 120583 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | || ||| || || || | || || || ||| | ||||| || Sbjct 120584 CGGTCTCGACAAGAAGACTGAGGGTGAGAAGAACGTCCTCATCTTCGATCTTGGTGGAGG 120643 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || |||| || || || || || || || || || || Sbjct 120644 TACCTTCGATGTCTCGCTCCTCACCATTGAGGAAGGTATCTTCGAGGTCAAGGCTACCGC 120703 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 |||||| || ||||||||||| || || ||||| || |||||||| || || || | Sbjct 120704 TGGTGACACCCATCTTGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTCGTCCA 120763 Query 349915 AGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGA-TAATCCTAGAGCAATGCGTCGCC 349973 || || ||||| |||| || | ||| | ||| || | || | ||||| | Sbjct 120764 GGAGTTCAAGCG-CAAGAACAAGAAGGACTTGACCACCAATGCTCGTGCTCTCCGTCGTC 120822 Query 349974 TAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTG 350033 | | || || ||||| ||||||||||| | | || || | |||| ||| | || | Sbjct 120823 TCCGCACCGCTTGTGAGCGTGCTAAGCGCACTCTTTCGTCGGCCGCCCAGACCACCATCG 120882 Query 350034 AAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTG 350093 | || || || || || || | || |||| | || || || ||||| || || | Sbjct 120883 AGATCGACTCGCTCTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCCCGTTTCG 120942 Query 350094 AAGA 350097 | || Sbjct 120943 AGGA 120946 >seq55 Length=29365 Score = 143 bits (158), Expect = 8e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || |||||||| |||||||| || || || || || || || | ||||| || || Sbjct 16002 AGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTTCGTCCGTCC 16061 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || ||||| || || || ||||| ||||||||||| ||||| ||||| || ||| Sbjct 16062 TCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCC 16121 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || |||||||| || | || || | || || ||||| || | ||| Sbjct 16122 TGAATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTC 16181 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | || || ||||| |||||||| Sbjct 16182 TTACCGGTCAAAGTCTTGACAAAGATCTGCAT 16213 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || || |||||||| || ||||| || || || Sbjct 16211 CATACCACCACGGAGACGAAGCACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTC 16270 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || || |||||||| || || ||||| || || Sbjct 16271 GGAGAGAGTGCGTCCATCCTCGAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGG 16330 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| || ||||| || || || || || || || |||| || || | || Sbjct 16331 TGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGGACTC 16390 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || |||||||| |||||||| Sbjct 16391 GACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTTACAAAGATCTGCAT 16441 >seq8 Length=117649 Score = 95.1 bits (104), Expect = 4e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 82472 ATACCACCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 82413 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || || || ||||| || || ||||| || || Sbjct 82412 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGG 82353 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || |||||||| || || || ||||| || || | || || | || Sbjct 82352 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCC 82293 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || ||||| |||| ||||| || ||| Sbjct 82292 ACCTCAAGGGTAATGGTCTTACCTGTT 82266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515249643521735