Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq241 304 1e-77 seq200 91.5 2e-13 >seq241 Length=120793 Score = 304 bits (336), Expect = 1e-77 Identities = 530/763 (69%), Gaps = 6/763 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | ||||||||||| | ||| | | ||| | ||||| ||| Sbjct 70997 TCATGCGTGTTGCTGTTGGTATCCACGGCCAGGACATCGAGAGTGCCATCGAGACCTACA 70938 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| |||||||||||||| ||||| | || ||||| |||||||| ||||| Sbjct 70937 ACCTCATGTCGCAAAAGTACTTTACCCACGCTTCCCCCACCCTCTTCAACGCCGGTACTC 70878 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||| ||| | ||| || ||||| || | |||||||| |||||||||||||||| Sbjct 70877 CCCACCCACAGCTCTCGTCGTGTTTCCTCGTCACCATGAAGGACGACTCGATCGACGGCA 70818 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | ||||| || |||||| || ||| ||||||||| | ||||| || ||| || Sbjct 70817 TTTACGACACTCTCAAGACCTGCGCCATGATCTCCAAGACCGCCGGTGGCATTGGTCTCA 70758 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | | | || | | ||| | || || || || |||||| | | | Sbjct 70757 ACATCCACTGCATTCGGGGTACCGGTTCCTACATTGCCGGTACCAATGGCGTCAGCAACG 70698 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || ||||| || ||||| ||||||||||| || |||||| ||||||||||| Sbjct 70697 GTATCGTACCCATGCTTCGTGTCTTTAACAACACGGCTCGCTACGTCGACCAGGGTGGTA 70638 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||||||| | ||||| |||||| | || | | |||| Sbjct 70637 ACAAGCGTCCTGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCGGATGTCTTTGAGT 70578 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 | ||||| |||||| ||| || || | || ||| |||| ||| || || || ||| Sbjct 70577 TCCTCGACCTGCGTAAGAACCACGGAAAGGAGGAGGTGCGTGCCCGAGAGCTCTTCTAC- 70519 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || || ||| | || || ||||||||| | | ||| ||| || ||| || |||| || Sbjct 70518 GCCCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTTGAGCAGAACGGTGACTGGTCGCTC 70459 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| |||||||||||||| ||| | | || |||||| || || ||| | | Sbjct 70458 ATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACTG-CTACGGCGACGAATTTGAGCGTCT 70400 Query 53791 GTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 || || || |||| | |||| |||| |||| | |||||||| | || | | Sbjct 70399 CTA-CGAGCGCTACGAGGCCGAGGGTCGCTCCAAGCGCACCGTCAAGGCCCAGAAGCTCT 70341 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || |||||| || ||| ||||| || | || | ||| ||||||||| Sbjct 70340 GGTACGCCATCCTCGAGTCGCAGACCGAGACCGGTAACCCCTTCATCCTCTACAAGGACG 70281 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 | | ||| |||||||||||||||||| | ||| |||||| Sbjct 70280 CTGCCAATCGCAAGAGCAACCAGAAGAACCTTGGCACCATCAA 70238 >seq200 Length=338114 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| |||||||||||||| ||||| | ||||||||| || ||| | ||||| Sbjct 72030 GTTGGCGAGCTTGGCACCGTAACCGTTTCTACCACCGGTGACCTTGGCCTCGTTGTCGTC 71971 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||||||| ||| | |||||| |||||||||||||| || || Sbjct 71970 GTAGTTGGACGAGGTGAGAAGGTGACCAAAGATGAGCTCTGGAAT 71926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214324151000