Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq199 109 3e-19 >seq199 Length=93844 Score = 109 bits (120), Expect = 3e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| || ||||| || || ||||| || || |||| || || || Sbjct 53683 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGC 53742 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 |||||||| || || | ||||| ||||| || || | |||||||||||| |||| || Sbjct 53743 TTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATC-TT 53801 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | ||| ||||| |||||| || | ||| || || ||||| || Sbjct 53802 GGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGT 53861 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTGA 34711 | || |||||||| |||||||| |||| Sbjct 53862 AAGGGTCTTCACAAAGATCTGCATCTTGA 53890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728660237085