Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq55 122 8e-23 seq112 113 4e-20 seq8 87.8 2e-12 >seq55 Length=29365 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || ||||||||| |||| || || || || || | ||| Sbjct 16441 ATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGTCCTCC 16382 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| |||||||| |||||||| || Sbjct 16381 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCAG 16322 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | || || | || | ||||| |||||| Sbjct 16321 CAGCGACTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGCACTCTCTCCGACTACAAC 16262 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || | || | ||| | || ||||| || Sbjct 16261 ATTCAGAAGGAGTCTACCCTCCACCTTGTGCTTCGTCTCCGTGGTGGTAT 16212 >seq112 Length=308905 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||||||||| ||| | ||||| ||||| || || | || Sbjct 97226 ATGCAGATTTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCT 97167 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || ||||| ||||| || || || || ||||| || Sbjct 97166 GATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 97107 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || ||| | ||| | || || |||||| Sbjct 97106 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAAC 97047 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || | ||| | || | || ||||| || Sbjct 97046 ATCCAGAAGGAGTCTACGCTTCACCTCGTTCTTCGACTCCGTGGTGGTAT 96997 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || ||||| ||||||||||| ||| | ||||| ||||| || || | || Sbjct 97455 CATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTC 97396 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | ||||| || ||||| || || || || || || ||||| || Sbjct 97395 TGATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCA 97336 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | || || || || | || ||| | ||| | || || ||||| Sbjct 97335 GCAGCGATTGATTTTTGCTGGTAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAA 97276 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || | ||| | || | || ||||| || Sbjct 97275 CATCCAGAAGGAGTCTACGCTTCACCTCGTTCTTCGACTCCGTGGTGGTAT 97225 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||| ||| | || || ||||| || || | || Sbjct 96542 ATGCAGATTTTTGTCAAGACGTTGACCGGTAAGACGATCACGCTTGAGGTCGAGTCTTCT 96483 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || ||||| || || || || || || ||||| || Sbjct 96482 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 96423 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || || | || || | || | |||||||||| Sbjct 96422 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACGCTGAGCGATTACAAC 96363 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||||||||| | || | || |||||| |||| || |||| Sbjct 96362 ATCCAGAAGGAGTCGACACTTCACCTTGTCTTGCGTCTGCGTGGCGGCA 96314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || ||| | || ||| | || || || | || Sbjct 96770 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACGATCACTTTGGAGGTTGAGTCTTCG 96711 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || ||||| || || || || || || |||||||| Sbjct 96710 GACACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGATCAG 96651 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || || | |||||| | || | ||| |||||| Sbjct 96650 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACTCTGAGCGACTACAAC 96591 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| | ||| |||| ||||| || Sbjct 96590 ATCCAGAAGGAGTCGACGCTTCACCTGGTGCTCCGTCTGCGTGGTGGTAT 96541 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || || | ||||| || | || Sbjct 96998 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCTTCT 96939 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || ||||| || || || ||||| || || || || Sbjct 96938 GATACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAG 96879 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| || || | ||||| | || | || || |||||| Sbjct 96878 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGTCTGACTACAAC 96819 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||| ||| | || | || ||||| | || ||||| || Sbjct 96818 ATTCAGAAAGAGAGCACCCTCCACCTCGTATTGCGACTTCGCGGTGGTAT 96769 >seq8 Length=117649 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || || ||| | ||||| ||||| ||||| | || ||| | || || | ||||| Sbjct 82267 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 82326 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| || || || || ||||| || ||||| | || | |||||| || Sbjct 82327 AAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 82386 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | ||| | || || |||||||| || |||||||||||| | || Sbjct 82387 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 82446 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | ||| | || ||||| || Sbjct 82447 CTCGTCCTCCGTCTCCGTGGTGGTAT 82472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917068062400