Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq241 105 9e-18 seq180 95.1 2e-14 >seq241 Length=120793 Score = 105 bits (116), Expect = 9e-18 Identities = 548/867 (63%), Gaps = 18/867 (2%) Strand=Plus/Plus Query 77678 AGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA---TATTGTATTAT 77734 ||| || || || || || || || || ||||| | || |||| || | || || Sbjct 70159 AGCGATCGAGGCAAGGTTGCAGACGGCGACCTCGT---CGGGGGCACTGTACTCGATGAT 70215 Query 77735 CTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT 77794 |||||| || || || || ||||| ||||| || || | ||||||||||| ||| Sbjct 70216 CTCGGTGCAGAGGTTGGAGCACTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGATT 70275 Query 77795 GCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGA 77854 | | |||||| || || || || || | ||||| || |||| || |||| || | Sbjct 70276 GGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGGC 70335 Query 77855 TTTCCAGACGACTCTAG-CTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAG 77913 | ||||| | ||| | | || | | ||| | || | ||| || || | Sbjct 70336 GTACCAGA-GCTTCTGGGCCTTGACGGTGCGCTTGGAGCGACCCTCGGCCTCGTAGCGCT 70394 Query 77914 TATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGC 77973 || || || |||||||| || || | || | | || ||||| || || |||| Sbjct 70395 CGTAGAGACGCTCAAATTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGC 70454 Query 77974 ACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATA 78033 |||| | ||||||||||| | | || ||| | ||||| |||||||| || | ||| | Sbjct 70455 ACATGAGCGACCAGTCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGGACCCAGA 70514 Query 78034 GAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGA 78093 | || || || ||||||| | || || ||||| ||||| || |||| Sbjct 70515 GGGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTTCCGTGGTTCTTACGCAGGTCGA 70574 Query 78094 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTT 78153 | ||||| | | ||| || ||||| || || | || || || | | ||||| || | Sbjct 70575 GGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCAGGACGCT 70634 Query 78154 TATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAA 78213 | ||||| ||||| || | || | || ||||| ||| | || | | ||| || | | Sbjct 70635 TGTTACCACCCTGGTCGACGTAGCGAGCCGTGTTGTTAAAGACACGAAGCATGGGTACGA 70694 Query 78214 TACCGTTAGATG-TTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 ||||||| | || ||||| || || | ||| || || | | ||||| | Sbjct 70695 TACCGTT-GCTGACGCCATTGGTACCGGCAATGTAGGAACCGGTACCCCGAAT----GCA 70749 Query 78273 ATGGAT----ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGT 78328 ||||| | || || || || || |||| || || | ||||| || | || Sbjct 70750 GTGGATGTTGAGACCAATGCCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGAGT 70809 Query 78329 ATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTG 78388 ||||| || || || || ||| ||| ||||| | | || ||||| || | || Sbjct 70810 GTCGTAAATGCCGTCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTG 70869 Query 78389 ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448 | || ||| || || || || | || || || || || ||||| | |||| || Sbjct 70870 TGGGTGGGGAGTACCGGCGTTGAAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTTTGCGA 70929 Query 78449 AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTAC 78508 | || ||||| || || || || || |||||| || || || || || || Sbjct 70930 CATGAGGTTGTAGGTCTCGATGGCACTCTCGATGTCCTGGCCGTGGATACCAACAGCAAC 70989 Query 78509 ACGCATCAACATATGCTGAGGTCTTTC 78535 |||||| | ||| ||||| || | ||| Sbjct 70990 ACGCATGAGCATGTGCTGGGGACGTTC 71016 >seq180 Length=182808 Score = 95.1 bits (104), Expect = 2e-14 Identities = 360/561 (64%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || ||||| |||||||| | || | ||||| || || ||||| Sbjct 14565 ACAGGCAAAGTCGGTGTGAAGGCCTTCATCACGGGAGATGAGCTCGTTGGAGAAGGTGAG 14624 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||||||||| || ||||| || |||||||| || || | ||||| || ||||| ||||| Sbjct 14625 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAA 14684 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTG 48316 || || || ||||| ||||| || || | || | | |||| | || | Sbjct 14685 GATACCCTCGACGGCAGCAAAGGCAACGAGACGTTCGGCAAAGGTGGCGCGCTTGTCGCT 14744 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || | ||||| |||||||||| ||| || || || || || | || | Sbjct 14745 GATCCAGCGAAGGGCCCAGTCAGCCTTCTCCTTGACTACGGGAATGGTCTCGACGGCGTC 14804 Query 48377 AAAGAGAAA---GtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 |||||| || | | |||| || || | ||| || || || | || || Sbjct 14805 AAAGAGGAACTCGCGCTGTTCA-GGC--TCACGGATGTAGGTGTCGATGAGGAGCGAGTA 14861 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 | |||||||| || || || || |||||||| ||||| || |||| || || | Sbjct 14862 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCATCGGGCCTCGGC 14921 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 ||| ||||| | | ||||| || | | ||||| || || || || || || Sbjct 14922 AGCCTGGACCTCGGAGCTGAATCGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAGGC 14981 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT--- 48610 || || || || | || || || || | || ||| | ||||| || Sbjct 14982 GGCGAAGAAGGCGAGGACGTGCGAGATGAAGTGACGCTCATTGTCGTTGAGTTTGTTGTC 15041 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||| || | | |||||||| | || | || || || ||||| || || || ||||| Sbjct 15042 CCAATCGTGAAGGTCTTTTGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCTTCTGC 15101 Query 48671 TTTTTTATACATATTCCATAT 48691 ||||| ||||| | ||| || Sbjct 15102 CTTTTTGTACATTTGCCAGAT 15122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666672576800