Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq199 178 3e-39 seq112 159 7e-34 seq55 158 3e-33 seq8 129 1e-24 seq10 87.8 4e-12 seq42 84.2 5e-11 >seq199 Length=93844 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || |||||||||||||| | Sbjct 53658 ACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 53717 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || ||||| ||||| | || || |||||| || Sbjct 53718 AAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGG 53777 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || ||| | || || ||||| |||| || || Sbjct 53778 AATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 53837 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||||||||| | ||||| || || |||||||| || Sbjct 53838 CTCGAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCATCTT 53888 >seq112 Length=308905 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | ||| || || |||||||||||||| | Sbjct 96999 ACCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 97058 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || ||||||||||| | ||| || ||||| || Sbjct 97059 GAGGGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGAGG 97118 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| || || || | || || || || |||| ||||| Sbjct 97119 GATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGAC 97178 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || |||||||| |||| |||||| ||||| |||||||| Sbjct 97179 CTCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAAATCTGCAT 97226 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 96543 ACCACCACGCAGACGGAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 96602 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| || || || || || || ||||||||||| || || || || || Sbjct 96603 CAGAGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGG 96662 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || || ||||| || || || | ||||| |||||||||| || || Sbjct 96663 GATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCAAC 96722 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||||||||| || || | ||||| || || || ||||| Sbjct 96723 CTCCAAAGTGATCGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCAT 96770 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | ||| || || |||||||||||||| | Sbjct 97227 ACCACCACGGAGTCGAAGAACGAGGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 97286 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || || ||||| ||||| || || ||||| || Sbjct 97287 GAGGGTTCGTCCGTCCTCGAGCTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGAGG 97346 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || || ||||| || || || | || || || || |||| ||||| Sbjct 97347 GATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGAC 97406 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || |||||||| |||| |||||| ||||| |||||||| Sbjct 97407 CTCAAGGGTAATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 97454 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || | || || || | || || || ||||||||||| || Sbjct 96316 CCGCCACGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGCTC 96375 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||||||||| || || || || ||||||||||| || || ||||| || Sbjct 96376 AGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGG 96435 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||| || || || | || || || || |||| ||||| Sbjct 96436 ATACCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACC 96495 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||||||||||||| ||||| ||||| || || |||||||| Sbjct 96496 TCAAGCGTGATCGTCTTACCGGTCAACGTCTTGACAAAAATCTGCAT 96542 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || | ||| || || | ||||| ||||| || ||||||||||||| Sbjct 96771 ACCACCGCGAAGTCGCAATACGAGGTGGAGGGTGCTCTCTTTCTGAATGTTGTAGTCAGA 96830 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || || || || ||||| || || | || || |||||| || Sbjct 96831 CAGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCAGGGGG 96890 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || || ||||| || || || | || || || || |||| ||||| Sbjct 96891 AATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGAC 96950 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||| ||||| || || | ||||| || || |||||||| Sbjct 96951 TTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 96998 >seq55 Length=29365 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || || ||||| | || || || |||||||||||||| | Sbjct 15987 CCACCGCGAAGACGGAGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 16046 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || ||||| || || | ||| || || ||| ||| Sbjct 16047 AGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGTGGA 16106 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || ||||| || || || ||||||| |||||||| | ||||| Sbjct 16107 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTATCGATGGTGTCCGAGGACTCGACC 16166 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| |||||||| ||||||||||| || || |||||||| Sbjct 16167 TCAAGAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATCTGCAT 16213 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | || || || || ||||||||||| | Sbjct 16214 ACCACCACGGAGACGAAGCACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 16273 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || |||||||| | || || ||||| || Sbjct 16274 GAGAGTGCGTCCATCCTCGAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGTGG 16333 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| || || ||| | ||||| ||||| || | ||||| Sbjct 16334 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGGACTCGAC 16393 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 16394 CTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTTACAAAGATCTGCAT 16441 >seq8 Length=117649 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || || || |||||||||||||| | Sbjct 82470 ACCACCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 82411 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| || || ||||| || Sbjct 82410 GAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 82351 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| || || || | ||||| |||||||| | || || Sbjct 82350 GATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCAC 82291 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || || || |||||||| || Sbjct 82290 CTCAAGGGTAATGGTCTTACCTGT 82267 >seq10 Length=76520 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 316975 TCGGATCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATA--TCCTTCGTCGGGA 317032 ||||| ||||| ||||| ||||| || || ||| || | || || || |||| Sbjct 36161 TCGGAACCGTCAAGGTCGTGCTCGACGTAC-CAGGTT-CGGACCTCGTCGGGCGAAGGGA 36218 Query 317033 ACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGG 317092 | || || | ||||||||| || || | ||| || |||||||| || | ||| ||| Sbjct 36219 AACCCTCAACCTGACCGTTGGTGATTGCACGCATGAGGGTCGACTTACCGGAACCGTTGC 36278 Query 317093 GGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAA 317152 | ||||||||||| ||| | || ||| ||| || || | |||| || |||| Sbjct 36279 GACCGCAAAGACCGTACTTGTGACCACGCTTGAGACGAAGGGTGGCGGTGTTGAGGAGAA 36338 Query 317153 TCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 |||| |||| || || || ||||||| ||| | || ||||||||||| Sbjct 36339 TCTTGGCACCGTAGGCGAGCGAGAACTGACAGTTGCAAAGGTCCTCGCC 36387 >seq42 Length=213897 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 167288 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167347 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 46752 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 46693 Query 167348 CCCGACTGGTGTCG 167361 |||| |||| |||| Sbjct 46692 CCCGCCTGGGGTCG 46679 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 167117 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167176 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 46752 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 46693 Query 167177 CCCGACTGGTGTCG 167190 |||| |||| |||| Sbjct 46692 CCCGCCTGGGGTCG 46679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735914220230