Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq199 156 1e-32 seq55 150 4e-31 seq112 138 3e-27 seq8 131 4e-25 >seq199 Length=93844 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||||||||||||||| || ||| Sbjct 53882 CAGATCTTTGTGAAGACCCTTACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGAC 53823 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || ||||| || || |||||||| Sbjct 53822 ACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAGCAG 53763 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || |||||||| || || | || ||| | || || ||| || Sbjct 53762 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATC 53703 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 53702 CAGAAGGAGTCCACCCTCCACCTTGT 53677 >seq55 Length=29365 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 16438 CAGATCTTTGTAAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGTCCTCCGAC 16379 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| ||||| || || || |||||||| Sbjct 16378 ACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCCGACCAGCAG 16319 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || |||||||| |||||| | ||||| |||| || ||| | Sbjct 16318 CGACTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGCACTCTCTCCGACTACAACATT 16259 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 16258 CAGAAGGAGTCTACCCTCCACCTTGT 16233 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || ||||| || ||||| || ||| ||| Sbjct 16210 CAGATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTCTTGAGGTCGAGTCCTCGGAC 16151 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| ||||| || || || || ||||| Sbjct 16150 ACCATCGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGATCAGCAG 16091 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||||||||| |||||||| || ||| | ||||| | || || ||| || Sbjct 16090 CGTCTCATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACTCTCTCGGACTACAACATC 16031 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 16030 CAGAAGGAGTCTACCCTTCATCTCGT 16005 >seq112 Length=308905 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || || || || ||||| ||||| || || || Sbjct 97223 CAGATTTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCTGAT 97164 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || |||||||| |||||||| Sbjct 97163 ACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAG 97104 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || ||| | || || | || || ||| || Sbjct 97103 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAACATC 97044 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || || ||| | ||||| Sbjct 97043 CAGAAGGAGTCTACGCTTCACCTCGTTCTTCGACTC 97008 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | || || || |||||||| || ||||| || || || Sbjct 96539 CAGATTTTTGTCAAGACGTTGACCGGTAAGACGATCACGCTTGAGGTCGAGTCTTCTGAT 96480 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||||||||| || || || |||||||| |||||||| Sbjct 96479 ACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAGCAG 96420 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || || |||||||| ||||| | || || |||||| ||| || Sbjct 96419 CGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACGCTGAGCGATTACAACATC 96360 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || ||||| || ||||| ||| Sbjct 96359 CAGAAGGAGTCGACACTTCACCTTGTCTTG 96330 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||||||||| |||||||| | ||||| || || ||| Sbjct 96767 CAAATCTTTGTCAAGACACTCACAGGAAAGACGATCACTTTGGAGGTTGAGTCTTCGGAC 96708 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||||||||| || || || |||||||| || ||||| Sbjct 96707 ACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGATCAGCAG 96648 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || || ||||| ||||| || | ||||| ||| || ||| || Sbjct 96647 CGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACTCTGAGCGACTACAACATC 96588 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 96587 CAGAAGGAGTCGACGCTTCACCTGGT 96562 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || |||||| | || || || || || Sbjct 96995 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAAGTCGAGTCTTCTGAT 96936 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||||||||| || || || || || || |||||||| Sbjct 96935 ACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAGCAG 96876 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || ||||||||||| |||||||||||||| | ||||| | || || ||| | Sbjct 96875 CGACTCATTTTCGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGTCTGACTACAACATT 96816 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||||| || || || || || ||| |||| Sbjct 96815 CAGAAAGAGAGCACCCTCCACCTCGTATTGCGACT 96781 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || || || || ||||| ||||| || || || Sbjct 97451 CAGATCTTCGTAAAGACTCTGACCGGTAAGACCATTACCCTTGAGGTCGAGTCTTCTGAT 97392 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||||||||| || || || |||||||| |||||||| Sbjct 97391 ACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAGCAG 97332 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || || |||||||| || ||| | || || | || || ||| || Sbjct 97331 CGATTGATTTTTGCTGGTAAGCAGCTCGAGGACGGACGAACCCTCTCGGACTACAACATC 97272 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || || ||| | ||||| Sbjct 97271 CAGAAGGAGTCTACGCTTCACCTCGTTCTTCGACTC 97236 >seq8 Length=117649 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 ||||| || || || ||||| |||||||| ||| ||||||||||| || ||||| Sbjct 82267 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 82326 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || ||||| || |||||||| || || ||||||||||| || Sbjct 82327 AAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 82386 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || || | || || ||| |||| || || || || || || Sbjct 82387 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 82446 Query 178125 CTTGT 178129 || || Sbjct 82447 CTCGT 82451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727421412530