Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq21 114 1e-20 >seq21 Length=224232 Score = 114 bits (126), Expect = 1e-20 Identities = 272/409 (67%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | | ||| || ||||| || || || | |||||||| || || ||| Sbjct 32430 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCGGGCATGAGACCACGCTTC 32489 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | || || || || || ||||| || |||||||||| || || Sbjct 32490 TTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAA 32549 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 || | | || ||||| | || ||| ||| | |||||| | |||| ||| Sbjct 32550 GCAACGAGACGCTCGGCAAAGGTGGCGCGCCTGTCGCTGATCCATCGAAGAGCCCAGTCG 32609 Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA--ATTTCTCTTTTTCCT 17222 || || ||||| | | || || || | ||| | ||| | | ||| | | | Sbjct 32610 GCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAAAGAGGAATTCACGCTGCTCG 32669 Query 17223 GTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCA 17282 | | ||| || |||| |||||||| || ||| | |||||||| |||||||||| Sbjct 32670 G--GTTCGCGAATGTACGAGTCGATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTCCA 32727 Query 17283 TGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATC 17342 | ||||| || ||||| ||||| ||||| || || |||||||| | ||| | Sbjct 32728 TCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGCAGCCTGAACTTCGGAGCTGAAAC 32787 Query 17343 GTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 | || |||| || ||||| ||||| |||||| |||||||| || || Sbjct 32788 GCTCGACTAGGTTCTCGTTGACGATACCGTCGGAAGCGGCGAAGAAAGC 32836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517507223993760