Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 114 2e-20 seq21 100 3e-16 >seq4 Length=437454 Score = 114 bits (126), Expect = 2e-20 Identities = 473/734 (64%), Gaps = 18/734 (2%) Strand=Plus/Minus Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 54007 || ||||||||||| || | | | | | || || || || | || ||||| | | Sbjct 48816 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGACCTGGGCACTCGTTGGGGCACATGAGC 48757 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 ||||| || |||| | || || | ||||| |||||||| || | ||| || || Sbjct 48756 GACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAG 48697 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 || || || | || | || || || || || || |||||||||||| | Sbjct 48696 AAGAGCTCACGGGCACGCATCTCTTCCTTGCCGTGGTTTTTGCGGAGATCGAGGAACTCA 48637 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | | ||| || ||||| || || | ||| |||| | | || || || ||||| || Sbjct 48636 AAGACATCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCCGGACGCTTGTTGCCA 48577 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 ||||| || | ||| | || ||||| ||| | || | | ||| || | ||||| || Sbjct 48576 CCCTGGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATGGGTACGATACCGTTA 48517 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AG 54306 |||| ||||| |||| ||| || || | | ||||| | | || | || Sbjct 48516 CTGACACCGTTGGTGCCGGCGATGTACGAGCCGGTACCGCGAAT-GCAGTGGATGTTGAG 48458 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGC 54365 ||| || || || || | || ||||| | || || ||| || | ||| || ||||||| Sbjct 48457 ACCGATACCACCGGCGGTCTTGGAGATCATGGCACA-CGTCTTGAGCGTGTCGTAGATGC 48399 Query 54366 CCTCTATACTATCATCCATCATGTTAAGTAGAAA--ACAGCTAGA-CATTTGGTGACGAC 54422 | || || || ||| ||||| | | || || || | ||| | | |||| | Sbjct 48398 CGTCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGTGTGG-- 48341 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 || || || || || | ||| || || ||||| ||||| |||| | || | |||| Sbjct 48340 -TGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATTTCTGGGACATGAGAT 48282 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCCCATTGA---TGAATTCCTACTGCGACACGCA 54539 |||| |||||||| || || || || |||| || || || || |||||||||| Sbjct 48281 TGTAAGTCTCGATGGCGCTCTCGATGTC---TTGACCGTGGATGCCAACAGCGACACGCA 48225 Query 54540 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTT 54599 | | |||||| ||||| | ||| ||| ||| ||| || |||| |||||| | Sbjct 48224 TGAGCATGTGTTGAGGACGCTCAGCGACCTTTCCGTTGATGCGGAGCAGGTAGGAACGCT 48165 Query 54600 CCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTCTCGTTCGTAAATAATAACTGAG 54658 | | || || || || || ||||||| || ||| || || || || || || | ||| Sbjct 48164 CGAGCGTCTTGAATCCGAAGAAGTTGTAGTGGAAA-TCGCGCTCATAGATGATGGCCGAG 48106 Query 54659 TTGAGTTTATCCTT 54672 | ||| | ||||| Sbjct 48105 TCGAGCTGGTCCTT 48092 >seq21 Length=224232 Score = 100 bits (110), Expect = 3e-16 Identities = 172/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || || ||| ||| ||||||||||| | || | |||||||| || || Sbjct 32405 CAAGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGT 32464 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 || |||||||| || |||||||| || ||||| || ||||| ||||| || || || || Sbjct 32465 AAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAA 32524 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG---CTGTC 24307 ||| || || || || || || || |||| || | || || | |||| ||||| Sbjct 32525 GAAGATGCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGGTGGCGCGCCTGTC 32584 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 ||||| ||||||| |||||||||| || || || || ||||| | || Sbjct 32585 GCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGC 32644 Query 24368 ATTAAAGAG 24376 | |||||| Sbjct 32645 GTCAAAGAG 32653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593677575543360