Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq67 98.7 8e-16 seq10 95.1 1e-14 seq18 84.2 2e-11 >seq67 Length=99859 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| |||||||| ||||||| ||||| || ||||||| ||||| ||||| Sbjct 38122 GTCGATTCCTTCTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCT 38181 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | |||||| || || | ||| |||||||| |||||| || Sbjct 38182 GCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 38241 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | || || | ||||||||||||||| || || || Sbjct 38242 ACGTTGTCGATCGTGTCCGAAGATTCGACCTCGAGGGTAATGGTCTTGCCAGTCAAGGTC 38301 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 38302 TTGACAAAGATCTGCAT 38318 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 ||||||||| |||||| |||||||| ||||||| || || | |||| |||||||| Sbjct 37888 TGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGCTGC 37947 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || | | ||||||||| || | ||||||||||| |||||| Sbjct 37948 TTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATCTTG 38007 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | | | || || | ||| ||||| ||||| ||||| || || Sbjct 38008 GCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTCTTTCCCGTG 38067 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || ||||| || ||||| Sbjct 38068 AGTGTCTTTACAAAGATCTGCAT 38090 >seq10 Length=322828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||||| |||||||| ||||| | || || || | ||| Sbjct 156355 AGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCC 156414 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | || |||| ||||||||| || | |||||||||||| Sbjct 156415 TCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCC 156474 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | ||| || || | || || | || || ||| Sbjct 156475 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGACCTCGAGAGTGATCGTC 156534 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| || || |||||||| || ||||| Sbjct 156535 TTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 >seq18 Length=237310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | || | || |||||||| || ||||| ||||||| Sbjct 132620 CCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 132561 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| ||||| || || ||| | || || | ||||||||| ||| Sbjct 132560 AGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 132501 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | ||| || || || |||| Sbjct 132500 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 132441 Query 21129 TCCACGGTAATGGTCTTGCCGGTT 21152 || | |||||||||||| || ||| Sbjct 132440 TCAAGGGTAATGGTCTTACCTGTT 132417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422228672243312