Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq21 401 6e-107 seq10 141 1e-28 seq67 122 9e-23 seq18 104 2e-17 >seq21 Length=224232 Score = 401 bits (444), Expect = 6e-107 Identities = 436/572 (76%), Gaps = 11/572 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | ||||| Sbjct 32965 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 32906 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||||| | | ||||||||||||||||| || ||| Sbjct 32905 TCCAAGGATCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGCCACTTTATCTCC 32846 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| |||||| |||||||||||||| || ||||||||| Sbjct 32845 CACGTCCTTGCTTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTAGTCGAGCGT 32786 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| |||| | || | |||| |||||||| || ||||||||||| || |||||| || Sbjct 32785 TTCAGCTCCGAAGTT-CAGGCTGCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGAT 32727 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 ||||||| | ||||| || | || ||| |||||||||| ||||| | ||| | || Sbjct 32726 GGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACTCGTACATTCGCGAACCCGA 32667 Query 116932 GGAGA---AGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | || | ||| || ||| |||| ||||||| || || |||||| ||||||| Sbjct 32666 GCAGCGTGAATTCCTCTT--TGA-CGCCGTCGAGACCATCCCCGTCGTCAAGCAGAAGGC 32610 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||| ||||| || || |||||| || ||| ||| |||| | |||||| || || || Sbjct 32609 CGACTGGGCTCTTCGATGGATCAGCGACAGGCGCGCCACCTTTGCCGAGCGTCTCGTTGC 32550 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||||| |||||||||||| ||||||| |||||| || || |||| || |||||||| Sbjct 32549 TTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTGCATCCATCTTCTGGCTCAA 32490 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || || ||||||||||| || || ||| |||||||||||||||| | |||||||| Sbjct 32489 GAAGCGTGGTCTCATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGG 32430 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||| || |||||||||||| ||||| |||| Sbjct 32429 TCTTCACACCGACTTTGCCTGCTTGCTCTTCA 32398 >seq10 Length=322828 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||||||||| ||||||||| |||| ||||| || || Sbjct 156794 ATGCAGATCTTTGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 156735 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | || || ||||| || || | || || Sbjct 156734 GACACCATTGACAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCACCTGATCA 156676 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| || ||||| ||||| || |||| ||||| ||| || ||||| Sbjct 156675 GCAGCGACTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCTCTGATTACAA 156616 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | ||||| || || || Sbjct 156615 CATCCAGAAGGAGTCGACGCTCCACCTCGT 156586 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || |||||||| || ||||||||| |||| || || | Sbjct 83508 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTTGAGTCT 83567 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| ||||| |||||| | ||| Sbjct 83568 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGAC 83627 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || || || ||||| || |||| || ||||| |||||| Sbjct 83628 CAGCAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTAC 83687 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||||||||| | || || || || ||| | ||| || | || || Sbjct 83688 AACATTCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGCCTGCGTGGTGG 83737 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| || ||||| |||| |||||| | | Sbjct 156566 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACGATCACTCTCGAGGTCGAATCGTCG 156507 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| || ||||| || | ||||| Sbjct 156506 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGACCA 156448 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| || || || ||||| || || | ||||| | ||||||||| Sbjct 156447 GCAGCGACTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAA 156388 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| |||| ||||| || || |||| Sbjct 156387 CATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 156352 >seq67 Length=99859 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||| ||| |||| |||||| | | Sbjct 38318 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATTACCCTCGAGGTCGAATCTTCG 38259 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||| || | || || Sbjct 38258 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCA 38200 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| ||||||||| |||||||| Sbjct 38199 GCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAA 38140 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| |||||||| | || || || || || ||||| Sbjct 38139 CATTCAGAAGGAATCGACCCTTCACCTTGTCTTGCG 38104 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| |||| || || | || Sbjct 38546 ATGCAGATCTTTGTCAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTAGAGTCTTCC 38487 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||| || | || || Sbjct 38486 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCA 38428 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| || || ||||| || |||| || |||||| |||||||| Sbjct 38427 GCAACGCCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAA 38368 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || || ||| Sbjct 38367 CATCCAGAAGGAATCGACCCTCCAT 38343 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| |||||||||||||| | || ||||| | | Sbjct 37862 ATGCAGATCTTTGTCAAGACGCTCACTGGCAAAACCATCACATTGGAAGTCGAGTCTTCG 37803 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||||| || || | ||||| ||||| ||||| | ||||| Sbjct 37802 GACACGATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCA 37744 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || ||| |||| || | ||||| || ||| ||||| Sbjct 37743 GCAGCGTCTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGCACTCTTTCCGATTACAA 37684 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| ||| |||| || || Sbjct 37683 CATTCAGAAGGAGAGCACCTTGCACCTCGT 37654 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| || |||||||| || || || || | || ||||| | | Sbjct 38090 ATGCAGATCTTTGTAAAGACACTCACGGGAAAGACGATTACGTTGGAAGTCGAGTCTTCG 38031 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||||| || || | ||||| || || ||||| | ||||| Sbjct 38030 GACACGATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGACCA 37972 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || |||||||| |||| ||||| ||| |||||||| Sbjct 37971 GCAGCGCTTGATCTTTGCCGGTAAGCAGCTGGAAGACGGTCGCACGCTCTCGGACTACAA 37912 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| ||| |||| || || | || ||| | || || Sbjct 37911 CATTCAGAAGGAGAGCACTTTGCACCTCGTACTTCGATTGCGCGGAGG 37864 >seq18 Length=237310 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||| ||| | || || || || | |||| | | | | |||||| Sbjct 132418 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 132477 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| |||||| | |||||||| || || |||| || || || Sbjct 132478 AAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTTGCCGGAAAG 132537 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| ||||| ||| ||||||||||||||||||||| | || || || Sbjct 132538 CAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 132597 Query 40894 CTAGT 40898 || || Sbjct 132598 CTTGT 132602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515180996496320