Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq67 136 5e-27 seq10 123 3e-23 >seq67 Length=99859 Score = 136 bits (150), Expect = 5e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 ||||| ||||||||||| ||||| |||||||| | ||||| || | || || | |||| Sbjct 37660 TGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTGC 37719 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 |||||||| || || || ||||||||||| | || | | |||||||||| ||| || Sbjct 37720 TTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTG 37779 Query 43101 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 |||| ||| | | | |||||| || || || || | |||||||||||||| || Sbjct 37780 GCCTTGA-CGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGT 37838 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| |||||||| ||||| Sbjct 37839 GAGCGTCTTGACAAAGATCTGCAT 37862 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 ||||| ||||||||||| ||||| ||||| || | || || || |||| || |||||| Sbjct 37888 TGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGCTGC 37947 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||| || || || | ||||||||||| | || | | ||||||||| ||| || Sbjct 37948 TTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATCTTG 38007 Query 43101 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 |||| ||| | | | |||||| || || || || | ||| || || || ||||| Sbjct 38008 GCCTTGA-CGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTCTTTCCCGT 38066 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||||||||| ||||| Sbjct 38067 GAGTGTCTTTACAAAGATCTGCAT 38090 >seq10 Length=322828 Score = 123 bits (136), Expect = 3e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| |||| |||| ||| |||||| ||||| ||||| || | | Sbjct 156340 CCTCCACGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 156399 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || |||||||| ||||| || ||||||||||||||||| | || Sbjct 156400 AAAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGA 156459 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | || ||||||||| ||| | || | |||| ||| | | | ||||| |||||| | Sbjct 156460 ATGCCTTCCTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGATTCGA 156517 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||| ||||| || ||||| || | ||||| |||||||| ||||| Sbjct 156518 CCTCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| || || || |||| || |||||||| || || || Sbjct 156603 CTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAA 156662 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||||||||||| || | || | | |||||| ||| ||| || |||| ||| Sbjct 156663 GATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATCCTGGATCTTGGCCTTGA-CGT 156721 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| |||||||| || ||||| | Sbjct 156722 TGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGA 156781 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 156782 CAAAGATCTGCAT 156794 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | || || || |||| || ||||||||||| || || Sbjct 83702 CTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCAAA 83643 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | | |||||||||| ||| || |||| | Sbjct 83642 GATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 83583 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || |||| |||||||| || ||||| || ||||| || Sbjct 83582 GTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 83523 Query 43172 AAAGATTTGCATTTT 43186 |||||| ||||| || Sbjct 83522 AAAGATCTGCATCTT 83508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571775199724960