Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4 196 1e-44 >seq4 Length=437454 Score = 196 bits (216), Expect = 1e-44 Identities = 793/1221 (65%), Gaps = 55/1221 (5%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| | ||| | ||||| | ||||| ||||| ||| || || || ||| || Sbjct 48128 GATTTCCACTACAACTTCTTCGGATTCAAGACGCTCGAGCGTTCCTACCTGCTCCGCATC 48187 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| ||| || || ||| |||||| | ||||| || ||||| || || ||| Sbjct 48188 AACGGAAAGGTCGCTGAGCGTCCTCAACACATGCTCATGCGTGTCGCTGTTGGCATCCAC 48247 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG----AGTGAACGCTGGAT 248984 | ||||| ||||||| ||||||| |||| ||| || || || | Sbjct 48248 GGTCAAGACATCGAGAGCGCCATCGAGACTTACAATCTCATGTCCCAGA-AATACT---T 48303 Query 248985 GACACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGT 249043 || || ||| | || || ||||||||||| ||||| | || | | ||||| |||| Sbjct 48304 TACCCACGCCTCGCCCACCCTCTTCAACGCTGGTACACCACACCCA-CAGCTCTCGTCGT 48362 Query 249044 GCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGA 249103 |||| || | ||||| | |||||||| |||||||||| || |||||||| | ||| Sbjct 48363 GCTTCCTGGTCACCATGAAGGACGACTCGATCGACGGCATCTACGACACGCTCA---AGA 48419 Query 249104 CG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAG 249160 || || | ||| || || ||| || || ||||||||| | || | ||| || | Sbjct 48420 CGTGTGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCAACATCCACTGCATTCGCG 48479 Query 249161 CGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTC 249220 | || ||||||||| || || || || |||||| | |||||||||||| | || | Sbjct 48480 GTACCGGCTCGTACATCGCCGGCACCAACGGTGTCAGTAACGGTATCGTACCCATGCTCC 48539 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGT 249277 | |||| | ||| ||| | | | || |||||| || | || ||| | | Sbjct 48540 GCGTCTTTAACAACACTGCCCGCTACGTCGACCAGGGTGGCAACAAGCGTCCGGGTGCCT 48599 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 | ||||| || | || |||||| | ||| | || |||||||| || | || | Sbjct 48600 TTGCCATCTACATTGAGCCATGGCACTCGGATGTCTTTGAGTTCCTCGATCTCCGCAAAA 48659 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || ||||||| || ||| | || ||||| |||||||||| ||| |||||| |||| Sbjct 48660 ACCACGGCAAGGAAGAGATGCGTGCCCGTGAGCTCTTCTACGCCCTCTGGGTCCCCGATC 48719 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCC 249457 | |||||| | ||| || ||||||| ||| |||| | | || ||| || Sbjct 48720 TCTTCATGAAGAGGGTCGAGCAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCC 48779 Query 249458 CGGACCTCATCGATCTAC-ACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAAT 249514 | | ||| ||| || | |||||| ||| || || | |||| || || ||||| Sbjct 48780 CAGGTCTCGCCGA-CTGCTACGGCGACGAGTTTGAGC--GCCTCTACGAGCGCTACGAGG 48836 Query 249515 CCAACGGCATCGGCAAG---ACAATCAAGGCTCGGACCCT-TTTTGCGAAGGTGGTGGAG 249570 || | || | |||| || ||||||| | || || | | || | | ||| Sbjct 48837 CCGAGGGTCGCTCCAAGCGAACCGTCAAGGCGCAGAAGCTCTGGTACG-CCATCCTCGAG 48895 Query 249571 TCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAG 249629 | ||||| ||||| || || | | || | | ||| ||||| |||| |||||| Sbjct 48896 TGCCAGACCGAGACCGGCAACCCCT-TCATCCTCTACAAGGACGCTGCCAACCGCAAGAG 48954 Query 249630 TAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCA--GAGGTGATTCAA 249687 ||||| | | || || |||||| | || || || |||||| ||| | || | Sbjct 48955 CAACCAGAAGAACCTCGGCACCATCAAGTGCTCCAA-CT-TGTGCACCGAGATCATCGAG 49012 Query 249688 TACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGCAC 249747 ||| || || ||| ||||||||||||||||| || |||||| | ||| Sbjct 49013 TACAGCGCCCCCGACGAGGTTGCCGTCTGCAACCTG----GCCTCAATCGCCCTGCCCAC 49068 Query 249748 GT-----GA--GGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACGGCGAAACA 249800 | || | | || |||| ||||||| ||||||||||| | || || | | Sbjct 49069 CTTTATCGACCCTGTCGCCAAAACGTACGACTTCAAGCGTCTTCACAG--CGTCGCCA-A 49125 Query 249801 GGCGAT---CAAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCTTGAGGAATG 249857 ||| || ||| || ||||||||| | ||||| |||| | || || | ||||| Sbjct 49126 GGCCATCTGCAAGAATCTCAACAAGATCATTGACATCAACTACTATCCTGTCGAGGAGGC 49185 Query 249858 CAGGTTGTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGT 249917 | | ||||||||| ||||| || ||| | || || || | || ||||| Sbjct 49186 CCGCAGATCCAACATGCGCCACCGCCCCATTGGTATCGGTGTCCAAGGTCTCGCCGACGC 49245 Query 249918 CTACATGGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACG-CTAAATAAACAGA 249976 || |||| | ||||| | | |||| ||||| ||||| || || || || ||||| Sbjct 49246 CTTCATGATCATGGGCTACGCCTTTGAGTCGCCCGAGGC-TCGTCGCCTCAACGTACAGA 49304 Query 249977 TTTTCGAGACCATCTATCACG 249997 | || ||||||||||| |||| Sbjct 49305 TCTTTGAGACCATCTACCACG 49325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073684789726976