Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq67 138 9e-28 seq10 111 1e-19 seq18 91.5 1e-13 >seq67 Length=99859 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || | ||||| | ||| | ||||| |||||||||||||||||||||||||| Sbjct 37864 CCTCCGCGCAATCGAAGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAG 37923 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| |||| ||||| || || ||||| || ||||| ||||| ||||| || || Sbjct 37924 AGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGG 37983 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCAC 45288 | ||| ||||||||| || || ||| | || | || | ||||| | ||| || Sbjct 37984 ATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGAAGACTCGAC 38042 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||||||||| ||||| || ||||| |||||||| ||||| Sbjct 38043 TTCCAACGTAATCGTCTTTCCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| ||||||||||||||||||||||| ||| || |||| | || |||| || Sbjct 37659 GTGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTG 37718 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| ||||| || || | ||||||||||||| || || Sbjct 37719 CTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTT 37778 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 ||| | || | || | ||||| | ||| || |||| || || || ||||| | Sbjct 37779 GGCCTTGA-CGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAG 37837 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 | || ||||| |||||||| ||||| Sbjct 37838 TGAGCGTCTTGACAAAGATCTGCAT 37862 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||||||||| || ||| |||| || || || || || || || Sbjct 38128 TCCTTCTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCAAAG 38187 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| || || ||||| | |||||||||||| || || ||| || Sbjct 38188 ATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 38247 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| | || ||||| | |||||| |||||||| |||| ||||| ||| Sbjct 38248 TCGATCGTGTCCGAAGATTCGACCTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACA 38307 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 38308 AAGATCTGCAT 38318 >seq10 Length=322828 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || || |||| || || || || ||||| || Sbjct 83702 CTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCAAA 83643 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| |||||||| || | ||||||||||||| || || ||| || Sbjct 83642 GATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 83583 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| | ||| ||||| | ||| || ||||| ||||| || ||||| || Sbjct 83582 GTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 83523 Query 45325 AAAGATTTGCATGTTG 45340 |||||| ||||| ||| Sbjct 83522 AAAGATCTGCATCTTG 83507 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| |||||||||||||||||||||| || ||| | || || Sbjct 156358 ACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCG 156417 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || || | ||||| ||||| || || | || ||||||||| | Sbjct 156418 AGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGA 156477 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| || ||||| | || ||||||||| Sbjct 156478 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGACCTCGAGAGTGATCGTCTTG 156537 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| |||||||| ||||| Sbjct 156538 CCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 >seq18 Length=237310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| || || || |||||||| || Sbjct 132585 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAA 132526 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| |||||||| || | ||||||||||||| ||| || ||| || Sbjct 132525 GATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACATT 132466 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | | | ||||| ||||||||| | |||||| ||||| || || Sbjct 132465 GTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTCTTACCTGT 132418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395046637544572