Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 315 6e-81 seq21 190 2e-43 seq10 104 2e-17 seq67 96.9 3e-15 >seq4 Length=437454 Score = 315 bits (348), Expect = 6e-81 Identities = 647/958 (68%), Gaps = 8/958 (1%) Strand=Plus/Minus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 |||||| ||||| || ||||| ||||| |||||||| || ||||||| | || || Sbjct 49060 GGCGATTGAGGCCAGGTTGCAGACGGCAACCTCGTCGGGGGCGCTGTACTCGATGATCTC 49001 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 ||| || | ||| ||||| || ||||| | || |||||||||| || || ||| Sbjct 49000 GGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGC 48941 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 | ||||||||||| ||| | || |||| |||||| ||| |||||| ||| || Sbjct 48940 AGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTGGCACTCGAGGATGGCGTA 48881 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 ||| | |||| || | || |||| | | | || || ||||||| | ||| Sbjct 48880 CCAGAGCTTCTGCGCCTTGACGGTTCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTA 48821 Query 23260 CA-ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 | ||| ||||| ||| | ||||| |||||||| || || || | | | || |||| Sbjct 48820 GAGGCGC-TCAAACTCGTCGCCGTAGCAGTCGGCGAGACCTGGGCACTCGTTGGGGCACA 48762 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 |||| ||| || | || || | |||| || ||||| || | ||| || | Sbjct 48761 TGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGGG 48702 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 ||||||| || || ||||| |||| ||| || |||||| ||| || | ||| | | Sbjct 48701 CGTAGAAGAGCTCACGGGCACGCATCTCTTCCTTGCCGTGGTTTTTGCGGAGATCGAGGA 48642 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 | || || || |||| ||||| ||||| | ||| | |||||| || ||||| | ||| | Sbjct 48641 ACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCCGGACGCTTGT 48582 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 |||| ||||| |||||||| ||||| |||||||| | || | ||||| || |||| || Sbjct 48581 TGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATGGGTACGATAC 48522 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 |||| | ||| ||| || | ||| || | | |||| | ||| | || Sbjct 48521 CGTTACTGACACCGTTGGTGCCGGCGATGTACGAGCCGGTACCGCGAATGCAGTGGATGT 48462 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 || ||| || || ||| | | || || ||||| || || || || |||||||||| Sbjct 48461 TGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGA 48402 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 |||| ||||| ||| || || | | ||||| ||| ||||| || | || | | | Sbjct 48401 TGCCGTCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGTGTG 48342 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 | ||| | || ||| || || || |||||| ||||||||| | ||||| |||| Sbjct 48341 GTGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATTTCTGGGACATGAGAT 48282 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 |||| || ||||||||| || ||||| | ||||| || || | ||||| ||||| | Sbjct 48281 TGTAAGTCTCGATGGCGCTCTCGATGTCTTGACCGTGGATGCCAACAGCGACACGCATGA 48222 Query 23859 TCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915 ||||| |||||| | || ||||| | ||||| || || ||| || ||||| | Sbjct 48221 GCATGTGTTGAGGACGCTCAGCGACCTT---TCCGTTGATGCGGAGCAGGTAGGAACGCT 48165 Query 23916 GCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | ||| || ||||| || ||| |||| || || || || | | |||||||| Sbjct 48164 CGAGCGTCTTGAATCCGAAGAAGTTGTAGTGGAAATCGCGCTCATAGATGATGGCCGA 48107 >seq21 Length=224232 Score = 190 bits (210), Expect = 2e-43 Identities = 392/575 (68%), Gaps = 25/575 (4%) Strand=Plus/Minus Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 ||| | || ||| | |||||||| ||||| || || || || ||||||| || || | Sbjct 32971 CCACAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATC 32912 Query 57624 GACCTGTCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTT 57680 ||||| || |||||||| ||| ||||| | ||||| || ||| | | ||| Sbjct 32911 GACCTTTCCAAGGATCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGCCACTTT 32852 Query 57681 ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTC 57740 || ||||| | || || |||||||| ||||| ||||| || |||||||| | ||| Sbjct 32851 ATCTCCCACGTCCTTGCTTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTAGTC 32792 Query 57741 GAAAGATTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAG 57798 || | ||||| ||||| || | | ||||| | ||||| ||||| || || Sbjct 32791 GAGCG--TTTCAGCTCCGAAGTTCAGGCTGCCGAGGCCCGCTGCTTCTACGGTTTCCAGA 32734 Query 57799 TGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858 | || || ||| | || || || | || ||||| |||||||| ||||| | | Sbjct 32733 TCATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACTCGTACATTCGCG 32674 Query 57859 ACAACGACGAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCA 57915 | || |||| | ||| | || || |||| |||| || || |||| ||| || Sbjct 32673 A--ACC-CGAGCAGCGTGAATTCCTCTTTGACGCCGTCGAGACCATCCCCG---TCGTCA 32620 Query 57916 AG---AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG---GCCACGTTCGCCG 57969 || ||||| || ||| | | |||||| | ||| || | ||||| || |||| Sbjct 32619 AGCAGAAGGCCGACTGGGCTCTTCGATGGATCA---GCGACAGGCGCGCCACCTTTGCCG 32563 Query 57970 AGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAA 58029 || | || | || |||||||||||||| || || ||||| |||||| |||||| | | Sbjct 32562 AGCGTCTCGTTGCTTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTGCATCCA 32503 Query 58030 TATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATAT 58089 | || ||| | ||||| || || || |||||||| || || || ||||||| | || | Sbjct 32502 TCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTTACCTTCTCCAACGAGCTCATCT 32443 Query 58090 CGCGCGACGAGGGTCTCCATACTGATTTTGCGTGC 58124 | || ||||||||||| || || || ||||| ||| Sbjct 32442 CCCGTGACGAGGGTCTTCACACCGACTTTGCCTGC 32408 >seq10 Length=322828 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| |||||||| |||| || ||| |||| Sbjct 156566 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACGATCACTCTCGAGGTCGAATCGTCG 156507 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || || |||||| Sbjct 156506 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGACCAG 156447 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| | || || ||| || ||| || ||| Sbjct 156446 CAGCGACTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 156387 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || ||||| || Sbjct 156386 ATTCAGAAGGAGTCCACCCTGCACCTGGTCCT 156355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| || || || || || |||||| |||| ||||| | Sbjct 83508 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTTGAGTCT 83567 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| || | || |||||| Sbjct 83568 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGAC 83627 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || || || || ||| | || ||| || | || || Sbjct 83628 CAGCAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTAC 83687 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||| || || ||||| || || || || ||| | ||| | || ||| Sbjct 83688 AACATTCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGCCTGCGTGGTGGT 83738 >seq67 Length=99859 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||||||||| || || || |||||| |||| || || | || Sbjct 38547 CATGCAGATCTTTGTCAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTAGAGTCTTC 38488 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||| ||| | || ||||| || Sbjct 38487 CGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCA 38428 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || |||||||| || ||| | || ||| || | || || || Sbjct 38427 GCAACGCCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAA 38368 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || |||||||| || ||| |||| || Sbjct 38367 CATCCAGAAGGAATCGACCCTCCATTTGGTCCT 38335 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || || ||| |||| || ||| | || Sbjct 38318 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATTACCCTCGAGGTCGAATCTTCG 38259 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || || ||| Sbjct 38258 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCAG 38199 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | || ||| || | || || ||| Sbjct 38198 CAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 38139 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || |||||||| ||||| || || Sbjct 38138 ATTCAGAAGGAATCGACCCTTCACCTTGT 38110 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || |||||||| ||||| | || || || | || Sbjct 37862 ATGCAGATCTTTGTCAAGACGCTCACTGGCAAAACCATCACATTGGAAGTCGAGTCTTCG 37803 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| || | || || |||||| Sbjct 37802 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 37743 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||||||||||| | ||| | |||||| ||| Sbjct 37742 CAGCGTCTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGCACTCTTTCCGATTACAAC 37683 Query 31373 ATTCAAAAAGA 31383 ||||| || || Sbjct 37682 ATTCAGAAGGA 37672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445733346421440