Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4 104 5e-17 >seq4 Length=437454 Score = 104 bits (114), Expect = 5e-17 Identities = 178/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || || || ||||||||||| || || | ||| || || || || || || Sbjct 48456 CCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCG 48397 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGT 94904 || || || || | | | | ||||||||||| || || || ||||||| ||| Sbjct 48396 TCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGTGTG-GTGT 48338 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| || || || ||||| || || |||||||| || | | |||||||||| || Sbjct 48337 ACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATTTCTGGGACATGAGATTGTA 48278 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 || || ||| | | ||||||| ||||| ||||| ||||| |||||||| | ||| Sbjct 48277 AGTCTCGATGGCGCTCTCGATGTCTTGACCGTGGATGCCAACAGCGACACGCATGAGCAT 48218 Query 95025 GTCCTGAGGGCGCTCA 95040 || ||||| |||||| Sbjct 48217 GTGTTGAGGACGCTCA 48202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989508787905060