Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 109 7e-19 seq21 100 4e-16 >seq4 Length=437454 Score = 109 bits (120), Expect = 7e-19 Identities = 373/569 (66%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 63351 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63410 |||||||||||| | | | ||| || ||||| || || | ||| ||||| | | || Sbjct 48651 AGATCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCC 48592 Query 63411 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63470 || || ||||| || ||||| || | ||| | || ||||| ||| | || | | ||| Sbjct 48591 GGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATG 48532 Query 63471 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA 63530 || | |||||||| | ||| ||||| |||| ||| || || | | ||||| Sbjct 48531 GGTACGATACCGTTACTGACACCGTTGGTGCCGGCGATGTACGAGCCGGTACCGCGAAT- 48473 Query 63531 TTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTA 63588 | | || | ||||| || || || || | || ||||| | || || ||| || | Sbjct 48472 GCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACA-CGTCTTGA 48414 Query 63589 ACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA--ACAGCTAGA 63646 |||||| |||||||| || || || || ||||| | | || || || | ||| Sbjct 48413 GCGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGA 48354 Query 63647 -CATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 63705 | | |||| | ||| || || || || | ||| || || ||||| ||||| ||| Sbjct 48353 GCTGTGGGTGTGGTGTA---CCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATT 48297 Query 63706 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA---TGAATTC 63762 | | || | |||||||| ||||| || || || || || |||| || || | Sbjct 48296 TCTGGGACATGAGATTGTAAGTCTCGATGGCGCTCTCGATGTC---TTGACCGTGGATGC 48240 Query 63763 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCA 63822 | || ||||||||||| | |||||| ||||| | ||| | | || ||| || | Sbjct 48239 CAACAGCGACACGCATGAGCATGTGTTGAGGACGCTCAGCGACCTTTCCGTTGATGCGGA 48180 Query 63823 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTCTCGTTCG 63881 || |||||| || | || || || || || ||||||| || ||| || || || Sbjct 48179 GCAGGTAGGAACGCTCGAGCGTCTTGAATCCGAAGAAGTTGTAGTGGAAA-TCGCGCTCA 48121 Query 63882 TAAATAATAACCGAATTGAGCTTATCCTT 63910 || || || |||| | ||||| ||||| Sbjct 48120 TAGATGATGGCCGAGTCGAGCTGGTCCTT 48092 >seq21 Length=224232 Score = 100 bits (110), Expect = 4e-16 Identities = 172/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || || || ||| ||| ||||||||||| | || | ||||| || || || Sbjct 32405 CAAGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGT 32464 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 || |||||||| || |||||||| || ||||| || ||||| || || || || || || Sbjct 32465 AAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAA 32524 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTC 33754 |||||| || || || || || || |||| || | ||| || | |||| ||||| Sbjct 32525 GAAGATGCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGGTGGCGCGCCTGTC 32584 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 ||||| ||||||| |||||||||| || || || || || || | ||| Sbjct 32585 GCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGC 32644 Query 33815 ATTAAAGAG 33823 | |||||| Sbjct 32645 GTCAAAGAG 32653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629770899024960