Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq21 100 4e-16 seq4 100 4e-16 >seq21 Length=224232 Score = 100 bits (110), Expect = 4e-16 Identities = 172/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || || || ||| ||| ||||||||||| | || | |||||||| || || Sbjct 32405 CAAGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGT 32464 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 || |||||||| || |||||||| || ||||| || ||||| ||||| || || || || Sbjct 32465 AAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAA 32524 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---ACTGTC 36330 ||| || || || || || || || |||| || | ||| || | ||| ||||| Sbjct 32525 GAAGATGCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGGTGGCGCGCCTGTC 32584 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 ||||| ||||||| |||||||||| || || || || ||||| | || Sbjct 32585 GCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGC 32644 Query 36391 ATTAAAGAG 36399 | |||||| Sbjct 32645 GTCAAAGAG 32653 >seq4 Length=437454 Score = 100 bits (110), Expect = 4e-16 Identities = 371/569 (65%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 66144 AGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 66203 |||||||||||| | | | ||| | ||||| || || | ||| ||||| | | || Sbjct 48651 AGATCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCC 48592 Query 66204 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 66263 || || ||||| || ||||| || | ||| | || ||||| ||| | || | | ||| Sbjct 48591 GGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATG 48532 Query 66264 GGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATA 66323 || | ||||| || ||| ||||| |||| ||| || || | | ||||| Sbjct 48531 GGTACGATACCGTTACTGACACCGTTGGTGCCGGCGATGTACGAGCCGGTACCGCGAAT- 48473 Query 66324 TTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTA 66381 | | || | ||||| || || || || | || ||||| | || || ||| || | Sbjct 48472 GCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACA-CGTCTTGA 48414 Query 66382 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA--ACAGCTAGA 66439 ||| || |||||||| || || || ||| ||||| | | || || || | ||| Sbjct 48413 GCGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGA 48354 Query 66440 -CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 66498 | | |||| | || || || || || | ||| || || ||||| ||||| ||| Sbjct 48353 GCTGTGGGTGTGG---TGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATT 48297 Query 66499 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA---TGAATTC 66555 | | || | |||||||| ||||| || || || || || |||| || || | Sbjct 48296 TCTGGGACATGAGATTGTAAGTCTCGATGGCGCTCTCGATGTC---TTGACCGTGGATGC 48240 Query 66556 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 66615 | || ||||||||||| | |||||| ||||| | ||| ||| ||| ||| || | Sbjct 48239 CAACAGCGACACGCATGAGCATGTGTTGAGGACGCTCAGCGACCTTTCCGTTGATGCGGA 48180 Query 66616 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTCTCGTTCG 66674 || |||||| || | || || || || || ||||||| || ||| || || || Sbjct 48179 GCAGGTAGGAACGCTCGAGCGTCTTGAATCCGAAGAAGTTGTAGTGGAAA-TCGCGCTCA 48121 Query 66675 TAAATAATAACCGAGTTGAGTTTATCCTT 66703 || || || |||||| ||| | ||||| Sbjct 48120 TAGATGATGGCCGAGTCGAGCTGGTCCTT 48092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658123996486880