Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq21 131 2e-25 >seq21 Length=224232 Score = 131 bits (144), Expect = 2e-25 Identities = 369/565 (65%), Gaps = 14/565 (2%) Strand=Plus/Plus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| || || || ||| ||| ||||||||||| | || || |||||||| || || Sbjct 32405 CAAGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGT 32464 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 || |||||||| || |||||||| || ||||| || ||||| ||||| || || || || Sbjct 32465 AAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAA 32524 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTC 50132 |||||| || || || ||||| || ||||| || | ||| || | ||||| ||||| Sbjct 32525 GAAGATGCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGGTGGCGCGCCTGTC 32584 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 ||||| ||||||| |||||||||| || || || || || || | ||| Sbjct 32585 GCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGC 32644 Query 50193 ATTAAAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGAC 50248 | |||||| | || | | || || || || | ||||| | || Sbjct 32645 GTCAAAGAGGAA----TTCACGCTGCTCGGGTTCGCGAATGTACGAGTCGATGAGGAGCG 32700 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 || | || || || ||||| || || ||||| || |||||||| || | |||| Sbjct 32701 AGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCT 32760 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 ||| | ||| ||||| | | || || || ||| || || || || || ||||| Sbjct 32761 CGGCAGCCTGAACTTCGGAGCTGAAACGCTCGACTAGGTTCTCGTTGACGATACCGTCGG 32820 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 || || || || || | || || ||||| || |||||| | || || | Sbjct 32821 AAGCGGCGAAGAAAGCAAGGACGTGGGAGATAAAGTGGCGCTCGTTGTCGTTGAGCTTGT 32880 Query 50429 T---CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 | ||| || | | ||| || || | || | || || | ||||| || || |||| Sbjct 32881 TGTCCCAGTCGTGAAGATCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCT 32940 Query 50486 CTGCCTTTTTATACATATTCCAGAT 50510 | ||||| || ||||| | |||||| Sbjct 32941 CGGCCTTCTTGTACATTTGCCAGAT 32965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718215540368480