Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq67 98.7 8e-16 >seq67 Length=99859 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| |||| || | || | || | |||||||||||| || | ||||| || || Sbjct 37864 CCTCCGCGCAATCGAAGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAG 37923 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||| || || |||||||| ||||| ||||| || || | || Sbjct 37924 AGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGG 37983 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | ||||| || ||| ||||| || |||||| Sbjct 37984 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACT 38043 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || || ||||| || || || || ||||| || ||||| Sbjct 38044 TCCAACGTAATCGTCTTTCCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42913 GTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCG 42972 ||||||||||| || | ||||||||||| | || || | || ||||| || || || Sbjct 37666 GTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTGCTTACCA 37725 Query 42973 GCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTG 43032 ||||| |||| ||||| || || | || | ||| || || || |||| | ||| Sbjct 37726 GCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 37785 Query 43033 ACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTT 43092 || || ||| ||||| || |||||| || | || || ||||| || || || || Sbjct 37786 ACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGTGAGCGTC 37845 Query 43093 TTCACAAAAATTTGCAT 43109 || ||||| || ||||| Sbjct 37846 TTGACAAAGATCTGCAT 37862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381342028408056