Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 109 7e-19 >seq4 Length=437454 Score = 109 bits (120), Expect = 7e-19 Identities = 373/570 (65%), Gaps = 20/570 (4%) Strand=Plus/Minus Query 72106 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCC 72165 |||||||||||| | | | ||| || ||||| || || | ||| ||||| | | ||| Sbjct 48651 AGATCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCC 48592 Query 72166 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 72225 || || ||||| || ||||| || | ||| | || ||||| ||| | || | | ||| Sbjct 48591 GGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATG 48532 Query 72226 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT- 72284 || | ||||| || |||| ||||| |||| ||| || || | | ||||| Sbjct 48531 GGTACGATACCGTTACTGACACCGTTGGTGCCGGCGATGTACGAGCCGGTACCGCGAATG 48472 Query 72285 -ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTT 72342 | || ||| ||||| || || || || | || ||||| | || || ||| || Sbjct 48471 CAGTGGATGTTG--AGACCGATACCACCGGCGGTCTTGGAGATCATGGCACA-CGTCTTG 48415 Query 72343 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA--ACAGCTAG 72400 | ||| || |||||||| || || || ||| ||||| | | || || || | || Sbjct 48414 AGCGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAG 48355 Query 72401 A-CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 72459 | | | |||| | || || || || || | ||| || || ||||| ||||| || Sbjct 48354 AGCTGTGGGTGTGG---TGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTAT 48298 Query 72460 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA---TGTATT 72516 || | |||| |||||||| ||||| || || || || || |||| || || Sbjct 48297 TTCTGGGACATGAGATTGTAAGTCTCGATGGCGCTCTCGATGTC---TTGACCGTGGATG 48241 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 || || ||||||||||| | ||| || ||||| | ||| ||| ||| || || Sbjct 48240 CCAACAGCGACACGCATGAGCATGTGTTGAGGACGCTCAGCGACCTTTCCGTTGATGCGG 48181 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTCTCGTTC 72635 | || |||||| || | || || || || || ||||||| || ||| || || || Sbjct 48180 AGCAGGTAGGAACGCTCGAGCGTCTTGAATCCGAAGAAGTTGTAGTGGAAA-TCGCGCTC 48122 Query 72636 GTAAATAATAACCGAATTGAGTTTATCCTT 72665 || || || |||| | ||| | ||||| Sbjct 48121 ATAGATGATGGCCGAGTCGAGCTGGTCCTT 48092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671089435028320