Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq21 228 1e-54 seq4 181 2e-40 seq132 105 1e-17 seq18 104 3e-17 >seq21 Length=224232 Score = 228 bits (252), Expect = 1e-54 Identities = 397/563 (71%), Gaps = 16/563 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | || ||| |||| || Sbjct 32965 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 32906 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||| ||||| | | | | || ||| ||||| | ||||| || Sbjct 32905 TCCAAGGATCTTCACGACTGGGACAACAAGCTCAACGACAAC-GAGCGCCACTTTATCTC 32847 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||| | | || ||||| |||| ||||| || ||||||||||| || || || || | Sbjct 32846 CCACGTCCTTGCTTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTAGTCGAG-C 32788 Query 125197 GATTCT-CTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 | ||| ||| |||| | | || |||| ||||| ||||| ||||| |||||| Sbjct 32787 GTTTCAGCTCCGAAGTTCAGGCTGCC-GAGGCCCGCTGCTTCTACGGTTTCCAGATCATG 32729 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC- 125314 || |||||| | ||||| || | ||||| || || ||| |||||||||||| || Sbjct 32728 ATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACTCGTACATTCGCGAACCC 32669 Query 125315 --GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAAA 125371 ||| ||| || | |||||| |||| |||| || | || ||| | | | || Sbjct 32668 GAGCAGCGTGAATTC---CTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAA- 32613 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGAC-GACAAGTCTTCGTACGCCGACAGACTGG 125430 ||| | |||| |||| |||||| ||| | | | | | | ||||| | || | Sbjct 32612 GGCCGACTGGGCTCTTCGATGGATCAGCGACAGGCGCGCCACCTTT-GCCGAGCGTCTCG 32554 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || ||||||||||| |||||||||||||| ||||| ||||| ||||||| |||| Sbjct 32553 TTGCTTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTGCATCCATCTTCTGGC 32494 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || ||||||||||| || || | |||||| | || || || |||| Sbjct 32493 TCAAGAAGCGTGGTCTCATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACG 32434 Query 125551 AGGGCCTACACTGTGACTTTGCC 125573 |||| || ||| ||||||||| Sbjct 32433 AGGGTCTTCACACCGACTTTGCC 32411 >seq4 Length=437454 Score = 181 bits (200), Expect = 2e-40 Identities = 342/498 (69%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || |||||| |||| Sbjct 48572 CAGGGTGGCAACAAGCGTCCGGGTGCCTTTGCCATCTACATTGAGCCATGGCACTCGGAT 48631 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || |||| | ||||||||| ||| |||||| || ||| | || Sbjct 48632 GTCTTTGAGTTCCTCGATCTCCGCAAAAACCACGGCAAGGAAGAGATGCGTGCCCGTGAG 48691 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || |||||||| || ||| | ||||||||| | ||| | | ||| || Sbjct 48692 CTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAACGGCGAC 48751 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || ||||||||| || || || ||||| |||| |||| ||||| |||||| Sbjct 48752 TGGTCGCTCATGTGCCCCAACGAGTGCCCAGGTCTCGCCGACTGCTACGGCGACGAGTTT 48811 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 ||| | ||| | ||||||| ||||| || | | | || ||| | || | | Sbjct 48812 GAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCAAGCGAACCGTCAAGGCGC-A 48870 Query 97176 GAA-CTGTGGAAGGCCATCGT-GACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 ||| || ||| | |||||| | || || ||| ||||| || | || | ||| |||| Sbjct 48871 GAAGCTCTGGTACGCCATCCTCGAGTGC-CAGACCGAGACCGGCAACCCCTTCATCCTCT 48929 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| | | || ||||| |||||||| || | |||||||||||| |||||| Sbjct 48930 ACAAGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGTGCTCCA 48989 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | ||||||| || || | |||||| | | || |||||| || || ||| |||| Sbjct 48990 ACTTGTGCACCGAGATCATCGAGTACAGCGCCCCCGACGAGGTTGCCGTCTGCAACCTGG 49049 Query 97354 CATCGGTCAATCTGCCCA 97371 | || || ||||||| Sbjct 49050 CCTCAATCGCCCTGCCCA 49067 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGAC-CAAGACGCTGATCGATATGGCTGCCGACAGA 98096 |||||||||| |||||||||| || | | ||| | | ||||| ||||| |||||| | Sbjct 49749 TCTACAAGACCGTCTGGGAGA-TCAGCCAGAAGGCCATCATCGACATGGCCGCCGACCGC 49807 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| || ||| |||| || ||| |||| | | | | | |||||| | | | Sbjct 49808 GGTGCCTTCATCTGCCAGTCGCAGTCGCTCAACATCCATCTCTCGGCGCCCACGTTCGGC 49867 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 | | || ||||| ||||| |||| ||||| ||||| |||||||| || | ||||| Sbjct 49868 CAGCTCACCTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACCGGTACCTACTAC 49927 Query 98217 CTGAGAACAAAGTCGGCCACCAATGCCATACCATTTAC 98254 ||| | || ||| | || |||| ||||| | ||| || Sbjct 49928 CTGCGCACCAAGCCTGCTTCCAACGCCATCCAATTCAC 49965 >seq132 Length=23786 Score = 105 bits (116), Expect = 1e-17 Identities = 396/615 (64%), Gaps = 26/615 (4%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| | ||||| |||||||| | ||| |||||||| || || ||||| Sbjct 13455 TTGCGGAAGAAGATCATACCGGCACGAGGACCACGGAGGGTCTTGTGGGTAGTGGTGGTG 13396 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAG-CCCGCAAT 127220 ||||||||||| ||||| |||||| ||| | | | |||| |||| |||| || Sbjct 13395 ACAATGTCACAGTACTCGAAGGGGTTGTTCTGGACCTGGGCAGCAA-CAAGACCCGAGAT 13337 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATC--GGCAATCTCTCGGAATCGT 127278 ||||||||| |||||||| || | ||||| ||| || || ||||| | || | | Sbjct 13336 GTGTGCAATGTCGGCCATGAGGTA--AGCCGACTGGGTCTTGGAGATCTC-AGCAAGCTT 13280 Query 127279 -CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337 |||||| || || || ||| | ||| |||| | | || ||||| Sbjct 13279 GGCGTAGTCCCAGTCACGGGGGTAGGCGGAGCCACCGCAGATGACCATGCGGGGCTTGAA 13220 Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397 || | ||| ||| || | | | |||| || | ||||| || || || || Sbjct 13219 GAGGTCGGCGTTCTTCTTGAGCTCGTCGTAGTTGATGTAGCCAGTGGCGGGGTCAACGTT 13160 Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA------------CGTTGCGGAA 127445 ||| || | | | ||| ||| || | || || | | || | | Sbjct 13159 GTAAGGGAAGGACTGGAAGTAGATCGAAGAGGCCGAGATCTTCTTCTTGGCAGTGTAGTA 13100 Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT 127505 ||||| |||| ||| || ||| ||||| |||| |||||||| | | || |||| Sbjct 13099 GCCGTGAGTCAAGTGACCACCGGAGGGCAAGCCGAGGCCCATGATACGGTCCTGGGGTTG 13040 Query 127506 AACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565 | | | ||| | ||||||||| || | ||||| ||||| || || || || Sbjct 13039 GAGAAGGGCGGTGAAGGTGGCAAAGTTCGCGGTGGAGCCAGAGTAAGGCTGAACGTTAAC 12980 Query 127566 TCCCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 ||||| | || ||| | ||||| || |||| |||||||| || | Sbjct 12979 GCCCCAGACCTTGGGGTCG---AGGTTGAAGGCCTTGAGGGCACGCTGCTGGCAGAGAAT 12923 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGA 127682 |||| ||||||| |||||||||| || |||||||| ||||| ||||||||| Sbjct 12922 CTCGAGCTGATCGATGTACTCGTTACCGCCGTAGTATCGGGCACCGGGGAGACCCTCCGA 12863 Query 127683 GTACTTGTTGATGAG 127697 |||||||||| |||| Sbjct 12862 GTACTTGTTGGTGAG 12848 >seq18 Length=237310 Score = 104 bits (114), Expect = 3e-17 Identities = 316/490 (64%), Gaps = 30/490 (6%) Strand=Plus/Plus Query 70063 AGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGT 70122 ||| |||||||| || || || ||||||||||| ||| | || | || ||| ||| Sbjct 33969 AGAAGGCGATCTTGGACCCGTCTACGGATTCCAATGGCGACATTTCGGAGCCACGTACAA 34028 Query 70123 AGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 |||||||| || ||||| | ||||| || ||||||||| | | ||||||||| Sbjct 34029 GGACTGCGATACCGACTACACTGGTCAAGGCGTTGATCAACTCGCCTCGGTCATTGACAA 34088 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 | | |||||| || ||| | | ||| | || || |||||||||| || ||| | Sbjct 34089 GATTCGAAACAATCCGACGGATCGACGCATCTTGCTGAGCGCATGGAATCCCGCTGATCT 34148 Query 70243 GCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTT--------------A 70287 | | ||||| | || ||||||||| |||||| | | | || | Sbjct 34149 CGAACTGATGGCCTTGCCTCCGTGTCACATGTTTGCCCAATTCTTCGTCTCGAATCTGGA 34208 Query 70288 CTCGTACG---------ATGGCAA-----AT-TGTCATGCTTAATGTATCAGAGGAGTGC 70332 | | |||| |||| || || | || ||| |||||||| | Sbjct 34209 CGCTTACGCAAAGGGACATGGGAAGAGACATCTTTCTTGCCAGATGTATCAACGTTCCTG 34268 Query 70333 CGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGAT 70392 |||| | || || || || || || |||||||| || ||| | ||||||| ||||||| Sbjct 34269 CGACCTTGGTCTGGGAGTCCCGTTCAACATTGCTAGTTATGCATTGTTGACCTACATGAT 34328 Query 70393 TGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGT 70452 ||| | | |||| || | | ||||| ||| |||| |||||| ||||||| Sbjct 34329 TGCCAAGGTGACCGATTGCGAACCCAAAGAGTTGGTATTGGCCATGGGCGACACTCACGT 34388 Query 70453 GTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCC 70512 || | ||| | || ||||||||| ||||||| ||| | || ||| || || || Sbjct 34389 ATACAAGGACCACGTGGAACCATTAAAGTTGCAACTGGAAAGAGATCCGCTGCCCTTCCC 34448 Query 70513 CAAGCTGGAG 70522 |||| || || Sbjct 34449 CAAGTTGAAG 34458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741004250460320