Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq21 86.0 5e-12 >seq21 Length=224232 Score = 86.0 bits (94), Expect = 5e-12 Identities = 169/248 (68%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 || || || || || |||||| || |||||||| || || || | ||||| | || Sbjct 32709 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGCAGCC 32768 Query 13511 TGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 |||||||||||| || | || ||| ||| ||||| || || ||||| ||| || Sbjct 32769 TGAACTTCGGAGCTGAAACGCTCGACTAGGTTCTCGTTGACGATACCGTCGGAAGCGGCG 32828 Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--TGA-CAACTTTAACCAA 13627 || |||||||| | ||| ||||| | ||||| || ||| | || ||| Sbjct 32829 AAGAAAGCAAGGACGTGGGAGATAAAGTGGCGCTCGTTGTCGTTGAGCTTGTTGTCCCAG 32888 Query 13628 TCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTC 13687 || ||| ||| || || | || | |||||| ||||||| || ||||| | |||||| Sbjct 32889 TCGTGAAGATCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTC 32948 Query 13688 TTATACAT 13695 || ||||| Sbjct 32949 TTGTACAT 32956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430951241588664