Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq67 125 2e-23 seq10 116 9e-21 seq18 100 7e-16 >seq67 Length=99859 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || ||||| || || || | ||||| || || || || || Sbjct 38122 GTCGATTCCTTCTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCT 38181 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||||||||| || || || || ||||| ||||| || || Sbjct 38182 GCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 38241 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || ||| ||||| || ||||| ||||| ||||| | || Sbjct 38242 ACGTTGTCGATCGTGTCCGAAGATTCGACCTCGAGGGTAATGGTCTTGCCAGTCAAGGTC 38301 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 38302 TTGACAAAGATCTGCAT 38318 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| || || || | ||||| || || || |||||| Sbjct 38350 GTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCA 38409 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | || ||||| ||||| || || || || ||||| ||||| || || Sbjct 38410 GCGAAGATGAGGCGTTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 38469 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || |||||||| || || || ||||||||||| || || Sbjct 38470 ACGTTGTCGATCGTGTCGGAAGACTCTACCTCGAGGGTGATGGTCTTACCAGTCAGAGTC 38529 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 38530 TTGACAAAGATCTGCAT 38546 >seq10 Length=322828 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || | ||| | || || || || || |||||| Sbjct 156370 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCA 156429 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || ||||| || || ||||| || ||||||||||| || || Sbjct 156430 GCAAAGATGAGTCGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTG 156489 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | ||| ||||| || || || ||||| || || | || Sbjct 156490 ACGTTGTCGATGGTGTCCGACGATTCGACCTCGAGAGTGATCGTCTTGCCGGTCAAGGTC 156549 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 156550 TTGACAAAGATCTGCAT 156566 >seq18 Length=237310 Score = 100 bits (110), Expect = 7e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || ||||| Sbjct 132590 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCG 132531 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || ||||||||||| || || Sbjct 132530 GCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTG 132471 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || | ||| || | ||| || ||||| || ||||| |||||||| || Sbjct 132470 ACATTGTCGATGGTGTC-CGAGGACTCCACCTCAAGGGTAATGGTCTTACCTGT 132418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151310889403856