Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 8e-16 seq67 87.8 2e-12 >seq10 Length=322828 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| ||||||||||| || | || || || ||||||| |||||||||||| | Sbjct 83702 CTCCTTCTGAATGTTGTAGTCCGA-AAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCAA 83644 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| || || | || ||||||||| || || ||||| | Sbjct 83643 AGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACAT 83584 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | |||||| ||||| || ||||| ||||| ||||| || || | Sbjct 83583 TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGA 83524 Query 48714 CAAAAATCTGCATCGTGT 48731 |||| ||||||||| ||| Sbjct 83523 CAAAGATCTGCATCTTGT 83506 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||||| | || |||| || |||||||| ||| | | Sbjct 156603 CTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAA 156662 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | || ||||| ||| || || ||||| Sbjct 156663 GATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATCCTGGATCTTGGCCTTGACGTT 156722 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||||| ||||| || ||||| || || |||||||| || || Sbjct 156723 GTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGAC 156782 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 156783 AAAGATCTGCATC 156795 >seq67 Length=99859 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||||||||| | | || | || | ||||||||||| ||||||||||| || | Sbjct 37863 ACCTCCGCGCAATCGAAGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGA 37922 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || |||| ||||||||||||||| | | || || |||||||| || || Sbjct 37923 GAGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGG 37982 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||||||| || || ||||| | || || || | |||||| Sbjct 37983 GATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGAC 38042 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || || || || ||||| || || ||||| |||||||| Sbjct 38043 TTCCAACGTAATCGTCTTTCCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 48530 GTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACC 48588 ||||||||||| |||||||||||||| | | | || || | || |||| ||||||||| Sbjct 37666 GTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTG-CGACCATCTTCCAACTGCTTACC 37724 Query 48589 GCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTT 48648 | | || | ||||||||| || || | || ||||||||| || || ||| Sbjct 37725 AGCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTT 37784 Query 48649 GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGT 48708 || | || || || | |||||| || | ||| |||||||| || ||||| || Sbjct 37785 GACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGTGAGCGT 37844 Query 48709 TTTCACAAAAATCTGCAT 48726 || ||||| |||||||| Sbjct 37845 CTTGACAAAGATCTGCAT 37862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421220745117932