Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq10 118 1e-21 seq67 105 6e-18 >seq10 Length=322828 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||||| || || ||||| || | ||| || ||| || |||| | | Sbjct 156352 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCA 156411 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| ||||| ||||||| | || ||||| || || ||||| ||||| ||| Sbjct 156412 TCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGAATGCCTTCCTTG 156471 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||||||| | ||| ||||| | ||||| || | ||||| Sbjct 156472 TCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGACCTCGAGAGTGATC 156531 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || || |||||||||||||| Sbjct 156532 GTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || ||| ||||||| | || |||||||| || |||||||| || || Sbjct 156640 TCTTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTA 156699 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | | | ||||| | | ||||| || | |||||| Sbjct 156700 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATG 156759 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| || |||||||||||||| Sbjct 156760 GTCTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| ||||||| | | ||||| || || || ||||| || ||| Sbjct 83665 TCCTCGAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTG 83606 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | ||| ||||| | || || || | |||||| Sbjct 83605 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATG 83546 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || |||||||||||||| Sbjct 83545 GTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 83511 >seq67 Length=99859 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| ||||| | ||||| | | ||||||||| |||||||| || || ||| Sbjct 38392 TCCTCGAGCTGCTTTCCAGCGAAGATGAGGCGTTGCTGATCGGGAGGAATGCCCTCCTTG 38451 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | ||| ||||| | || || || | |||||| Sbjct 38452 TCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCTACCTCGAGGGTGATG 38511 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| ||||| || ||||||||||||||| Sbjct 38512 GTCTTACCAGTCAGAGTCTTGACAAAGATCTGCATG 38547 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | |||||| | || | ||||||||| ||||| || | ||| || || Sbjct 37864 CCTCCGCGCAATCGAAGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCG-- 37921 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || || |||||||| || ||| ||||||| || | ||||| || || | Sbjct 37922 AGAGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTG 37981 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | |||||||| ||||| | || || ||||||||| | | | ||||| | |||| Sbjct 37982 GGATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGA 38041 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||| || || ||||| || || || || |||||||||||||| Sbjct 38042 CTTCCAACGTAATCGTCTTTCCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||| || | ||| | || |||||||| || | ||| || || | ||| | Sbjct 38103 TCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGAGAGGGTGCGGCC 38162 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||| ||||| || || ||||||| | | |||||||| |||||||| || || || Sbjct 38163 GTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTT 38222 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||||||| | ||| ||||| | ||||| || | || || Sbjct 38223 GTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGACCTCGAGGGTAAT 38282 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| | || || |||||||||||||| Sbjct 38283 GGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 |||||| || ||||| || | ||| |||||| | |||| ||| |||| ||| Sbjct 37659 GTGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTG 37718 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || ||||||| | | ||||| || || || ||||| || ||||| | || || Sbjct 37719 CTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTT 37778 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||||||| | | | ||||| | ||||| || | ||||||||||| ||||| Sbjct 37779 GGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGT 37838 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 || || || |||||||||||||| Sbjct 37839 GAGCGTCTTGACAAAGATCTGCAT 37862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257959207520