Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq35 161 2e-35 >seq35 Length=163744 Score = 161 bits (178), Expect = 2e-35 Identities = 184/246 (75%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 16447 CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCG 16506 ||||||| | ||||| |||||||| || ||||||||||| |||||||| ||||| || || Sbjct 52038 CAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCGCG 51980 Query 16507 TCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 ||||||||| ||||||||| ||||||| | |||| || |||| |||| ||| | || Sbjct 51979 TCGTGGTGGTGTCAAGCGTATCTCTGGTCTTATCTACGACGAGACCCGTGGTGTCCTCAA 51920 Query 16567 GATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAA 16626 | ||||||| || | || |||| || | || ||| || |||||||| || || || Sbjct 51919 GCTCTTCCTTGAGTCGGTCATCCGCGACTCGGTCACCTACACTGAGCACGCCAAGCGCAA 51860 Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686 ||| |||||||| | || | ||||| || | || || || ||||| | |||| || Sbjct 51859 GACCGTCACCTCGCTCGACGTTGTCTACGCTCTCAAGCGCCAGGGCCGCACCCTTTACGG 51800 Query 16687 TTTTGG 16692 ||| || Sbjct 51799 TTTCGG 51794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069776330876