Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq21 109 7e-19 >seq21 Length=224232 Score = 109 bits (120), Expect = 7e-19 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| || || || ||| ||| ||||||||||| | || || |||||||| || || Sbjct 32405 CAAGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGT 32464 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 || |||||||| || |||||||| || ||||| || ||||| || || || || || || Sbjct 32465 AAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAA 32524 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTC 33476 |||||| || || || || || || |||| || | ||| || | |||| ||||| Sbjct 32525 GAAGATGCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGGTGGCGCGCCTGTC 32584 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 ||||| ||||||| |||||||||| || || || || || || | ||| Sbjct 32585 GCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGC 32644 Query 33537 ATTAAAGAG 33545 | |||||| Sbjct 32645 GTCAAAGAG 32653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622901008465120