Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 318 2e-81 >seq4 Length=437454 Score = 318 bits (352), Expect = 2e-81 Identities = 1188/1835 (65%), Gaps = 58/1835 (3%) Strand=Plus/Plus Query 363358 ATCAATTATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCC 363417 |||| |||||| ||| || | || | | ||||||| |||||| | ||| ||| Sbjct 48113 ATCATCTATGAGCGCGATTTCCACTACAACTTCTTCGGATTCAAGACGCTCGAGCGTTCC 48172 Query 363418 TACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTT 363477 ||||| || ||||| || | | | ||| || || || || ||| | |||||||| Sbjct 48173 TACCTGCTCCGCATCAACGGAAAGGTCGCTGAGCGTCCTCAACACATGCTCATGCGTGTC 48232 Query 363478 GCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT 363537 ||| |||| ||||| | | || | || ||| || || || || || || | || Sbjct 48233 GCTGTTGGCATCCACGGTCAAGACATCGAGAGCGCCATCGAGACTTACAATCTCAT--GT 48290 Query 363538 GCTCGTG-TA-TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCAC 363595 | | || || || |||||| |||| || | | ||| ||||| || | | |||| Sbjct 48291 CCCAGAAATACTTTACCCACGCCTCGCCCACCCTCTTCAACGCTGGTACACCACACCCAC 48350 Query 363596 AGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA 363655 || | || || ||||| || | | ||||||||||| || ||||| || |||| |||| Sbjct 48351 AGCTCTCGTCGTGCTTCCTGGTCACCATGAAGGACGACTCGATCGACGGCATCTACGACA 48410 Query 363656 CACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACA 363715 | || |||| ||||| | || ||||||| || || || || ||| | |||||| Sbjct 48411 CGCTCAAGACGTGTGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCAACATCCACT 48470 Query 363716 ATGTTCGTGC-ACAGAACAGTTACATTCGCGGCAC--AGGGGGATACTCGAATGGGCTGG 363772 |||| | || | || |||| |||||| | || | | | || || | | Sbjct 48471 GCATTCGCGGTACCGGCTCGT-ACATCGCCGGCACCAACGGTGTCAGT--AACGGTATCG 48527 Query 363773 TTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGC 363832 | |||||||| || || ||| |||| ||||| | ||||||||||||||||| |||| Sbjct 48528 TACCCATGCTCCGCGTCTTTAACAACACTGCCCGCTACGTCGACCAGGGTGGCAACAAGC 48587 Query 363833 GCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTG 363892 | || || ||||| || || | ||||| || | ||| | |||||||| || | Sbjct 48588 GTCCGGGTGCCTTTGCCATCTACATTGAGCCATGGCACTCGGATGTCTTTGAGTTCCTCG 48647 Query 363893 AGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTT 363952 | ||||| |||||| || || || || ||||||| ||||| || ||||| || || | Sbjct 48648 ATCTCCGCAAAAACCACGGCAAGGAAGAGATGCGTGCCCGTGAGCTCTTCTACGCCCTCT 48707 Query 363953 GGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAG-AATTGGTCACTCTTTTGC 364011 |||| | || | || |||||| | || || |||| | | ||||| ||| | ||| Sbjct 48708 GGGTCCCCGATCTCTTCATGAAGAGGGTCGA-GCAGAACGGCGACTGGTCGCTCATGTGC 48766 Query 364012 CCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAA 364071 || |||| || |||||||| |||| | || ||||| | || || ||||| Sbjct 48767 CCCAACGAGTGCCCAGGTCTCGCCGACTGCTACGGCGACGAGTTTGAGCGCCTCTACGAG 48826 Query 364072 AAGTATGAATCGGAGGGAAAGGCTCGTAAG---ACAATTCCCGCACAGAAGCTATGGTTT 364128 || || | ||||| |||| ||| || | || |||||||| |||| Sbjct 48827 CGCTACGAGGCCGAGGG--TCGCTC-CAAGCGAACCGTCAAGGCGCAGAAGCTCTGGTAC 48883 Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188 |||||| | || | |||| ||||| || | |||| || | ||||| || | | Sbjct 48884 GCCATCCTCGAGTGCCAGACCGAGACCGGCAACCCCTTCATCCTCTACAAGGACGCTGCC 48943 Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248 ||||||||| ||||||| || |||| || || || || |||| | || |||||| Sbjct 48944 AACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGTGCTCCAACTTGTGCACCGAG 49003 Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308 || || || |||| ||| ||||||||| |||||| || ||||| || || ||||| || Sbjct 49004 ATCATCGAGTACAGCGCCCCCGACGAGGTTGCCGTCTGCAACCTGGCCTCAATCGCCCTG 49063 Query 364309 CCGGCGTTTGTAAAAGATG------GTACTTTTGACCACCAGCATCTTTATGACGTAACC 364362 || | ||| | | || || | ||| | ||| |||| | ||| || Sbjct 49064 CCCACCTTTATCGACCCTGTCGCCAAAACGTACGACTTCAAGCGTCTTCACAGCGTCGCC 49123 Query 364363 TA--TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTG 364420 | ||| || | | |||||| ||||| | || |||| || || ||||| | | Sbjct 49124 AAGGCCAT-CTGCAAG-AATCTCAACAAGATCATTGACATCAACTACTATCCTGTCGAGG 49181 Query 364421 AAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTG 364480 | ||| | || || ||||| || ||||| |||||| | ||||| || || ||||| | Sbjct 49182 AGGCCCGCAGATCCAACATGCGCCACCGCCCCATTGGTATCGGTGTCCAAGGTCTCGCCG 49241 Query 364481 ACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGG 364540 ||| || ||||| | || ||||| ||||| || |||||| || || Sbjct 49242 ACGCCTTCATGATCATGGGCTACGCCTTTGAGTCGCCCGAGGCTCGTCGCCTCAACGTAC 49301 Query 364541 AGATCTTTGAAACAATGTATTTTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACC 364599 |||||||||| || || || || || | || | ||||| || |||| | Sbjct 49302 AGATCTTTGAGACCATCTACCACGCTGCCCTCGAACG-ATCGTGCGAGCTGGCTCAGGAG 49360 Query 364600 AAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGAT 364659 | || | ||| || || | || || ||| |||||||| | | |||| || Sbjct 49361 CACGGCACCTACGAGACCTACGCTGGCTCGCCTGCCTCGCAGGGTGAGCTGCAGTACGAC 49420 Query 364660 CTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAG 364719 | ||| |||||||| || | || ||| |||||| ||| ||| | |||| Sbjct 49421 ATGTGGGGCGTCACGCCTTCGGACCTCTGGGACTGGGCAGAGCT------CAAGGCTAAG 49474 Query 364720 ------AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACT 364773 ||||| ||| ||||||||| ||| | || || ||||| || || || || Sbjct 49475 ATCGCCAAGCACGGTCTTCGCAACTCGCTCTTGCTCGCTCCTATGCCTACTGCCTCGACC 49534 Query 364774 GCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGC 364833 |||||| | || ||||||||||||||| || | || ||| | || || || Sbjct 49535 AGTCAGATCTTGGGTTTCAACGAGTGCTTCGAGCCTTACACCTCCAACATCTACTCGCGT 49594 Query 364834 CGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGAC 364893 || || || |||| || || | ||| || || | | || || || ||| Sbjct 49595 CGTGTGCTCGCCGGTGAGTTCCAGGTGGTCAACCCTTGGTTGCTCCGCGAGCTCGTCGAG 49654 Query 364894 CGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAG 364953 | || ||||| |||| ||||||||| ||||||||| ||||| | ||| Sbjct 49655 CAGGGCTTGTGGAACGACACGATGAAGAACCGCATCATCGCCCACGGCGGTTCCATCCAG 49714 Query 364954 AACATTCCAGGATTTCCAGA--AGATC-TGAAGCCTATTTACAAAACCGTATGGGAAAT- 365009 ||| | || || | || || ||| ||||| | ||||| ||||| ||||| || Sbjct 49715 AACGTGCCCGGCATCCCCGACCGCATCAAGAAGC---TCTACAAGACCGTCTGGGAGATC 49771 Query 365010 TTCCATGCGAA--CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGC 365067 ||| ||| | |||| || ||||| ||||| |||||||| || ||||| ||| Sbjct 49772 AGCCA---GAAGGCCATCATCGACATGGCCGCCGACCGCGGTGCCTTCATCTGCCAGTCG 49828 Query 365068 CAGTCGTTTAACGTATTCATGACTC--AGCCAACCTCCGCCAAGCTTACATCCATGCATT 365125 |||||| | ||| || ||| ||| ||| || | || | |||| || || ||||| | Sbjct 49829 CAGTCGCTCAAC--ATCCATCTCTCGGCGCCCACGTTCGGCCAGCTCACCTCGATGCACT 49886 Query 365126 TCTACGGGTGGAAATCCGGTCTTAAGACAGGTGCC 365160 ||||||| ||||| ||||| ||||| ||| || Sbjct 49887 TCTACGGCTGGAAGAAGGGTCTCAAGACCGGTACC 49921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303254540238824