Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 201 1e-46 seq67 116 3e-21 seq10 116 3e-21 seq18 98.7 9e-16 >seq4 Length=437454 Score = 201 bits (222), Expect = 1e-46 Identities = 578/872 (66%), Gaps = 19/872 (2%) Strand=Plus/Minus Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTC 145683 |||||| || |||| || || || || ||| |||| | ||||||| | | |||||| Sbjct 49060 GGCGATTGAGGCCAGGTTGCAGACGGCAACCTCGTCGGGGGCGCTGTACTCGATGATCTC 49001 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 || |||||| ||| || |||||||| || || || | ||| || || || | |||| Sbjct 49000 GGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGC 48941 Query 145744 CGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACG 145803 |||||||||||||| ||| | || ||| ||||| ||| ||| | ||| || Sbjct 48940 AGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTGGCACTCGAGGAT--GGCG 48883 Query 145804 GTGCA-AG-TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTG 145861 || || | |||||| || ||| | |||| ||||| | ||||| | | Sbjct 48882 TACCAGAGCTTCTGCGCCTTGACGGTTCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCG 48823 Query 145862 TAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACAC 145921 ||||| ||||||| || |||||||| |||| || || || |||| |||||| ||| Sbjct 48822 TAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGACCTGGGCACTCGTTGGGGCAC 48763 Query 145922 ATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGC 145981 || |||||||| ||||||| | ||| | || ||| || | ||| || ||||| || Sbjct 48762 ATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGG 48703 Query 145982 GCGTACATCAAGTCGCGCGCTTTGCA-ATCCTCAGCACCCATGTTTCGCTTCAAATTAAG 146040 ||||| | | || || || ||| || || || |||| | || || Sbjct 48702 GCGTAGAAGAGCTCACGGGC-ACGCATCTCTTCCTTGCCGTGGTTTTTGCGGAGATCGAG 48644 Query 146041 CACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG-- 146097 | ||| | ||| |||| |||||| || ||||| |||| ||| | ||| || || Sbjct 48643 GA-ACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCCGGACGCT 48585 Query 146098 -TTTGCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGA 146156 |||||||||||||| |||| || | |||||||||||||||| | |||||| ||| Sbjct 48584 TGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATGGGTACGA 48525 Query 146157 CGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAA 146216 ||| | || ||||| || | || | |||| ||| | ||| || | Sbjct 48524 TACCGTTACTGACACCGTTGGTGCCGGCGATGTACGAGCCGGTACCGCGAATGCAGTGGA 48465 Query 146217 CATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCG 146275 || | |||| ||| ||| || |||||| || ||| || ||| |||||| ||| Sbjct 48464 TGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTC-TTGAGCGTGTCG 48406 Query 146276 TAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCG 146333 ||||||||||| || ||| |||| ||| || ||| |||||||| | | ||| | Sbjct 48405 TAGATGCCGTCGATCGAGTCGTCCTTC--ATGGTGACCAGGAAGCACGACGAGAGCTGTG 48348 Query 146334 CCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCA 146393 || || || || ||| | || || ||||| ||||| ||| || || Sbjct 48347 GGTGTGGTGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATTTCTGGGACA 48288 Query 146394 TCATCCGATACGTTTCGATAGCG-TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACG 146452 | | || || ||||| ||| ||| | ||||| | || || ||||| | |||||| Sbjct 48287 TGAGATTGTAAGTCTCGATGGCGCTCTCG-ATGTCTTGACCGTGGATGCCAACAGCGACA 48229 Query 146453 CGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 ||||||||||||||||| || ||||| || || Sbjct 48228 CGCATGAGCATGTGTTGAGGACGCTCAGCGAC 48197 Score = 105 bits (116), Expect = 6e-18 Identities = 156/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| ||||| | |||||||||| | || | ||| || ||| | || Sbjct 49626 TTGACCACCTGGAACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGAGGTGTAAGGC 49567 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| |||| ||| ||| ||||| || || ||||| || | | Sbjct 49566 TCGAAGCACTCGTTGAAACCCAAGATCTGACTGGTCGAGGCAGTAGGCATAGGAGCGAGC 49507 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || | || ||||| || |||||||| ||| | |||| ||| |||| ||||| Sbjct 49506 AAGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTAGCCTTGAGCTCTGCCCAGTCCCAG 49447 Query 145238 AG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCA 145274 || ||||| || | ||| |||||||||||||||||| Sbjct 49446 AGGTCCGAAGGCG---TGACGCCCCACATGTCGTACTGCA 49410 >seq67 Length=99859 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | |||| || | || | |||||| ||||| ||||||||||| || Sbjct 38092 CCACCGCGGAGTCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGAG 38151 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||||||||| |||| | ||||||||| || ||||| Sbjct 38152 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGGA 38211 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | || |||| Sbjct 38212 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGACC 38271 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||| || || || | || || || || |||||||| Sbjct 38272 TCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || |||||||| || || || | || | || |||||| ||||||||||| || Sbjct 37864 CCTCCGCGCAATCGAAGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAG 37923 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || |||||||| || || |||| || ||||||||||| || ||| Sbjct 37924 AGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGG 37983 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | ||||||| Sbjct 37984 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACT 38043 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || || || ||||| || |||||||| Sbjct 38044 TCCAACGTAATCGTCTTTCCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| ||||||||||||||| | ||||| || || | |||||| || || | Sbjct 37671 CTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTGCTTACCAGCAAA 37730 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | |||||||||||| || ||||| || || ||||| ||| || ||||| | Sbjct 37731 GATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 37790 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | || || | ||||||| || | || | |||||| || || || || || || Sbjct 37791 GTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGTGAGCGTCTTGAC 37850 Query 131223 GAAAATCTGCAT 131234 || |||||||| Sbjct 37851 AAAGATCTGCAT 37862 >seq10 Length=322828 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | |||||||||||| ||||||||||| || Sbjct 83737 CCACCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAA 83678 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| || || |||| | ||||||||||| || ||| Sbjct 83677 AGGGTACGGCCGTCCTCGAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 83618 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 83617 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACC 83558 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| ||||| || || || || || || |||||||| Sbjct 83557 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 83511 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | ||||||||||| || ||||||||||| Sbjct 156568 CCACCACGCAGACGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGAG 156627 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || ||||||||||| || |||| | |||||||| || || || Sbjct 156628 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGA 156687 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||||| | || | || |||| |||||||| Sbjct 156688 ATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACC 156747 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || ||||| || || || |||||||| Sbjct 156748 TCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | |||||| || | || | ||| |||||||| ||||||||||| ||| | Sbjct 156340 CCTCCACGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 156399 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || || |||| | ||||||||||| || || Sbjct 156400 AAAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGA 156459 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | || || | || |||| Sbjct 156460 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGACC 156519 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| | || || || || |||||||| Sbjct 156520 TCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 >seq18 Length=237310 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | |||||||||||| || |||||||| || Sbjct 132620 CCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 132561 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || || |||| | ||||||||||| || ||| Sbjct 132560 AGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 132501 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | |||||| | Sbjct 132500 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 132441 Query 131188 TCGACGGTAACGGTTTTACCGGTT 131211 || | ||||| ||| ||||| ||| Sbjct 132440 TCAAGGGTAATGGTCTTACCTGTT 132417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471977800250880