Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq214 140 2e-28 seq8 120 2e-22 seq222 104 2e-17 >seq214 Length=1468 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 29 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 88 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 89 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 123 >seq8 Length=363778 Score = 120 bits (132), Expect = 2e-22 Identities = 209/304 (69%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| ||||||||| ||| ||||| | | | |||| |||| || | Sbjct 333085 ATGTCGACGACAAGTTCTACCGATACCGCATGCCTCTCCTACAGACCAAAATCGAAGGCA 333144 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| |||||||| || |||||||| ||||||| | || | ||| ||||| | | Sbjct 333145 AGGGCAACGGTATCAAGACCGTCATCCCCAACATGTCCGACATTGCTCGTTCGCTCAGCC 333204 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 | ||| ||||||| || || || | || || ||||| || || |||||||| ||| | Sbjct 333205 GTCCTCCCACCTATCCCACCAAGTTCTTTGGATGCGAGCTCGGTGCTCAGACCTCGTTCG 333264 Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426 || | || ||||| || | ||| || ||||| | || || | | || | || Sbjct 333265 ATGAGAAGAACGACCGGTACATTGTCAACGGCGCCCACGACGCCGATCGTCTTCGTGAAC 333324 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 | || |||||||| || ||||||||| || || | || ||| | ||||||||||||| Sbjct 333325 TCCTCGACGGCTTCATCGACAAGTTTGTCCTCTGCGGCGATTGCAAGAACCCGGAGACCG 333384 Query 6487 AGCT 6490 | || Sbjct 333385 ATCT 333388 >seq222 Length=1351 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 728 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 669 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 668 CCCAATATTTAGCCTTA 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334922984573492