Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq21 183 3e-41 >seq21 Length=224232 Score = 183 bits (202), Expect = 3e-41 Identities = 379/561 (68%), Gaps = 5/561 (1%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 ||||| ||||||||||| || | ||| ||||| || || || | ||| ||| ||| || Sbjct 32406 AAGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTA 32465 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | ||| || | || || || ||||||||||| || || || ||||| || || || Sbjct 32466 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAAG 32525 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 || || || || ||||| || || || || | ||| |||||||| | ||| | | Sbjct 32526 AAGATGCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGGTGGCGCGCCTGTCG 32585 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 ||||||||| | |||||| ||||| || | ||| | || | || |||| ||| Sbjct 32586 CTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCG 32645 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 | ||| ||| | || |||| || | || || ||||| | ||||| | || || || Sbjct 32646 TCAAAGAGGAATTCACGCTGCTCGGGTTCGCGAATGTACGAGTCGATGAGGAGCGAGTAG 32705 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 | || || |||| |||||||| || ||||| |||||||| || | || || | Sbjct 32706 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGCA 32765 Query 93449 ATCTGCACTTCTTGAG-AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 ||| ||||| ||| || | ||| || || || || ||||| ||||| ||||| || Sbjct 32766 GCCTGAACTTC-GGAGCTGAAACGCTCGACTAGGTTCTCGTTGACGATACCGTCGGAAGC 32824 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATC 93564 || || ||||| | | || ||||| || ||| | || || ||| || || Sbjct 32825 GGCGAAGAAAGCAAGGACGTGGGAGATAAAGTGGCGCTCGTTGTCGTTGAGCTTGTTGTC 32884 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| ||| ||||| || ||||| |||| || || | ||||| || || || || || Sbjct 32885 CCAGTCGTGAAGATCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGC 32944 Query 93625 TTTTTTGTACATATCCCATAT 93645 || |||||||| | ||| || Sbjct 32945 CTTCTTGTACATTTGCCAGAT 32965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556819508771680