Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq27 95.1 2e-14 seq9 95.1 2e-14 seq4 93.3 9e-14 >seq27 Length=191231 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAA 279403 ||| |||||||| || ||||| | ||||||||||| ||||||| ||||| ||||| || Sbjct 123784 AGGCGAGGATCTTTGCAACTGTCAATTCTCGCTCGCCTATGGTGCCAAGATCCTGCTCAA 123843 Query 279404 CTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 | || | |||| ||||||||||| || ||| ||||| ||||| || || | Sbjct 123844 CACTGCAACCCTCCGTCTCAAGCGTGGCCACAAGTACGGTCTTTGCGGTCGTAACGGTTC 123903 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523 || ||| || || ||||||||||| | || || ||| | || || || || | | Sbjct 123904 CGGAAAGTCGACCCTCATGCGCGCCATCACCAATGGCCAGGTCGAGGGTTTCCCATCCCC 123963 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 ||||| | || ||| || ||||||||| | ||| Sbjct 123964 CGACGAGGTCCGCACCTGGTACGTCGAGCACGACCTGGAC 124003 >seq9 Length=345713 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||||| |||| ||||||||||| |||||| ||| || |||||||| || ||||| ||| Sbjct 230560 GGTGTGCTTGGTCCCAATGGTGCTGGTAAGAGTACACTCATCAAAGTGCTCACTGGTGAG 230501 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 | | || | | |||| | | | ||||||||||||| |||| || || | || Sbjct 230500 A-CTGTTCCTCAGCAGGGTAAGGTGGAGAAGCATCCCAACTTGCGTATTGCCATGATGGC 230442 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| ||||||||| | ||| | || ||||| | | | || | |||||||| Sbjct 230441 GCAGCACGCCTTCCACCACTTGGAGCAGCATCTGGAAAAGTCGGCTGTCGAATACATTGC 230382 Query 280349 GTGGCGCTA 280357 ||||| || Sbjct 230381 CTGGCGATA 230373 >seq4 Length=437454 Score = 93.3 bits (102), Expect = 9e-14 Identities = 359/559 (64%), Gaps = 19/559 (3%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| ||| || |||||||| || || || || | ||| || | | |||| Sbjct 49831 CTGCGACTGGCAGATGAAGGCACCGCGGTCGGCGGCCATGTCGATGATGGCCTTCTGGCT 49772 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGA--ATGCCAATAACCTTC 293232 ||||||||| |||||||| | ||||| | || | ||||| || ||| Sbjct 49771 GATCTCCCAGACGGTCTTGTAGAGCTTCTTGA--TGCGGTCGGGGATGCCGGGCACGTTC 49714 Query 293233 TGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGA 293292 ||||| || || |||| ||| || || |||||||||| || ||| ||| || | Sbjct 49713 TGGATGGAACCGCCGTGGGCGATGATGCGGTTCTTCATCGTGTCGTTCCACAAGCCCTGC 49654 Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352 | | ||||||||||| | ||| |||||| || |||||||||| ||||| ||| Sbjct 49653 TCGACGAGCTCGCGGAGCAACCAAGGGTTGACCACCTGGAACTCACCGGCGAGCACACGA 49594 Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412 || ||| ||||| || ||| || ||| ||| | || | |||||| Sbjct 49593 CGCGAGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGAAACCCAAGATCTGACTG 49534 Query 293413 GTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCTTCTTGACACGC 293472 || || || ||||||||| |||| | || ||||| | | ||| | |||| || Sbjct 49533 GTCGAGGCAGTAGGCATAGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGCTTG----GC 49478 Query 293473 GAT-------TCGAGACCCGCCCAGT-CCAGAGCAGTCTG-AGGTGTAACACCCCAGAGA 293523 ||| | ||| | ||||||| |||||| ||| | ||| || || ||||| | Sbjct 49477 GATCTTAGCCTTGAGCTCTGCCCAGTCCCAGAG--GTCCGAAGGCGTGACGCCCCACATG 49420 Query 293524 TGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGC 293583 | ||||||| ||||| |||||| || || | |||| | || ||| ||| Sbjct 49419 TCGTACTGCAGCTCACCCTGCGAGGCAGGCGAGCCAGCGTAGGTCTCGTAGGTGCCGTGC 49360 Query 293584 TCATCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCA 293643 || | || |||||||| ||| || | ||||| ||| ||| ||| ||||||| Sbjct 49359 TCCTGAGCCAGCTCGCACGATCGTTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGT 49300 Query 293644 CGGTTGAGCTTGCGAGCCT 293662 |||||| ||||||| Sbjct 49299 ACGTTGAGGCGACGAGCCT 49281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027758680548812