Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq10 179 7e-40 seq67 158 2e-33 seq18 118 2e-21 seq4 113 8e-20 seq27 109 1e-18 >seq10 Length=322828 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || |||| |||| ||| || |||||||| || || ||||| || ||||| Sbjct 156340 CCTCCACGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 156399 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || || || ||||||| || ||||| |||||| Sbjct 156400 AAAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGA 156459 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| ||||||||| ||||||||||| | ||||| || Sbjct 156460 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGACC 156519 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || | ||||||||| || |||||||| Sbjct 156520 TCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || || ||||| || || || Sbjct 83737 CCACCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAA 83678 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || |||||||| || Sbjct 83677 AGGGTACGGCCGTCCTCGAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 83618 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 83617 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACC 83558 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||||||||||||||| || |||||||| Sbjct 83557 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 83511 >seq67 Length=99859 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || || || || | || | ||| | ||| ||| || || ||||| |||||| Sbjct 37633 TTACCGCCACGGAGACGGAGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAATCG 37692 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || || | |||||||| |||||||| || || || || || | || ||||| ||| Sbjct 37693 GAAAGAGTGCGACCATCTTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGT 37752 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || || || |||||||| || ||||| ||||||||| || || ||||| | || || Sbjct 37753 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCG 37812 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||||||||| || ||||| |||||||| || |||||||| Sbjct 37813 ACTTCCAATGTGATGGTTTTGCCAGTGAGCGTCTTGACAAAGATCTGCAT 37862 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| | || | ||| | ||| | ||| ||| || || ||||| || || ||| Sbjct 37864 CCTCCGCGCAATCGAAGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAG 37923 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| ||||| || || | | || ||||| ||||| Sbjct 37924 AGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGG 37983 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||||||| || || ||||| | || || ||| Sbjct 37984 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACT 38043 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||||||||| ||||| || || |||||||| Sbjct 38044 TCCAACGTAATCGTCTTTCCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 >seq18 Length=237310 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || |||||||| || || ||| Sbjct 132620 CCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 132561 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || |||||||| || Sbjct 132560 AGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 132501 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| |||||||| ||||||||||| | || || || Sbjct 132500 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 132441 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||| ||||| || || || Sbjct 132440 TCAAGGGTAATGGTCTTACCTGT 132418 >seq4 Length=437454 Score = 113 bits (124), Expect = 8e-20 Identities = 807/1279 (63%), Gaps = 37/1279 (3%) Strand=Plus/Minus Query 30795 ATGGCGTTTGCAGCAGGCTTGCTTCTGCAG-TAATACATAAGCGTCTTGAGACCCTTCTT 30853 |||||||| | |||||||||| | | |||| || || || ||||||||||||||||| Sbjct 49956 ATGGCGTTGGAAGCAGGCTTGGTGC-GCAGGTAGTAGGTACCGGTCTTGAGACCCTTCTT 49898 Query 30854 CCATGCATAGAACAGCATGGAAGACAT-TGACTTCATAGAGGGCGCTGCAACGAAGAGGT 30912 ||| | ||||| |||| || | | || | | | |||||| | | || || Sbjct 49897 CCAGCCGTAGAAGTGCATCGAGGTGAGCTGGCCGAAC-GTGGGCGCCGAGAGATGGATGT 49839 Query 30913 TCATGCTCTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCT 30972 | | ||| | |||| | || | ||||||||| || || | ||| |||| || || Sbjct 49838 TGAGCGACTGCGACTGGCAGATGAAGGCACCGCGGTCGGCGGCCATGTCGATGATGGCCT 49779 Query 30973 TCATAGACAGCTCCCATGCGGTCTTGTAGATTGCCTTGA-GCTCAGGGTGGATGCCAATG 31031 || | |||||| |||||||||||| ||||| || || ||||||| | Sbjct 49778 TCTGGCTGATCTCCCAGACGGTCTTGTAGAGCTTCTTGATGCGGTCGG-GGATGCCG--G 49722 Query 31032 ACACGTT--GGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACG 31089 |||||| ||||||| || |||| ||| || || |||||||||| | ||| |||| Sbjct 49721 GCACGTTCTGGATGGAACCGCCGTGGGCGATGATGCGGTTCTTCATCGTGTCGTTCCACA 49662 Query 31090 TGCCACGAGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAA 31149 ||| | ||| ||| ||||| | | | ||||||||| ||||||| || || | Sbjct 49661 AGCCCTGCTCGACGAGCTCGCGGAGCAACCAAGGGTTGACCACCTGGAACTCACCGGCGA 49602 Query 31150 GGGTCCGGCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGC-CTCTACGGACCCGCAG 31208 | || || ||| | || || ||| ||||| | ||| ||| | | || || Sbjct 49601 GCACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCGA-AGCACTCGTTGAAACCCAAG 49543 Query 31209 ATTTGCGCGGTGGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACCCTTC 31268 || || ||| || || || ||||| | ||| ||||| || | | ||| | | Sbjct 49542 ATCTGACTGGTCGAGGCAGTAGGCATAGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGC 49483 Query 31269 TTGACGCGCT---CTTCGAGGGTCTTCC-AGTCAAGGCGAGTTACC--GGCTCGGTTCCC 31322 ||| || || | | ||| ||| || |||| | || | | ||| | ||| Sbjct 49482 TTGGCGATCTTAGCCTTGAGC-TCTGCCCAGTCCCAG--AGGTCCGAAGGCGTGACGCCC 49426 Query 31323 CAGAGGTGATACTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGA 31382 || | || ||||||| | |||| | || || || || || | |||| | || Sbjct 49425 CACATGTCGTACTGCAGCTCACCCTGCGAGGCAGGCGAGCCAGCGTAGGTCTCGTAGGTG 49366 Query 31383 CCGTGCTCTTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAG 31442 |||||||| | || || ||||| || || | || || ||| || |||||||| Sbjct 49365 CCGTGCTCCTGAGCCAGCTCGCACGATCGTTCGAGGGCAGCGTGGTAGATGGTCTCAAAG 49306 Query 31443 ATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCAT-GCGCAGCTTGAAGAA 31501 || | ||||||| ||| || || ||||| ||| | || || | | ||| Sbjct 49305 ATCTGTACGTTGAGGCGACGAGCCTCGGGCGACTCAAA-GGCGTAGCCCATGATCATGAA 49247 Query 31502 CACGTCCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTT 31561 |||| ||||| |||||||| | ||||| ||||| |||||||||| ||| Sbjct 49246 GGCGTCGGCGAGACCTTGGACACCGATACCAATGGGGCGGTGGCGCATGTTGGA--TCTG 49189 Query 31562 CG--CCTCGGGAATTGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTTCTTGGCCAGA 31619 || |||| | | ||| | ||| ||||||| |||||| ||| |||||| |||| Sbjct 49188 CGGGCCTCCTCGACAGGATAGTAGTTGATGTCAATGATCTTGTTGAGATTCTTG--CAGA 49131 Query 31620 AT--CTTCACGTGCTTGCGAAGGTCCTCAAAGTCGTA------GGCACCGTTCTTGACGT 31671 ||| || || |||| || |||||||| ||| | | || Sbjct 49130 TGGCCTTGGCGACGCTGTGAAGACGCTTGAAGTCGTACGTTTTGGCGACAGGGTCGATAA 49071 Query 31672 AGTTCTGGAGGACGATGCTTCCAATGACACACACCGCCGTTTCGTCCGTAGAAGTGTATT 31731 || | | ||| |||| | | | || || || ||||| | | |||| | Sbjct 49070 AGGTGGGCAGGGCGATTGAGGCCAGGTTGCAGACGGCAACCTCGTCGGGGGCGCTGTACT 49011 Query 31732 CGACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGCATGTTCT 31791 ||| ||||||| || | ||| || | ||||||||||| || ||| || ||| Sbjct 49010 CGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCT 48951 Query 31792 TCACGTTCACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATGA 31851 | ||| | |||||||| ||| | | | || |||| |||||| |||| || Sbjct 48950 TGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTGGCACTCGA 48891 Query 31852 TCATCGCATTCCAGACATCGCGCGCTTTGACGACTTTCTTCGCACGCCCCTCGGACTCGT 31911 || || | ||||| | |||| |||||| | ||| | || ||||||| ||||| Sbjct 48890 GGATGGCGTACCAGAGCTTCTGCGCCTTGACGGTTCGCTTGGAGCGACCCTCGGCCTCGT 48831 Query 31912 AGCGAAGATACAGGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCT 31971 |||| || ||| ||| |||| | ||| || |||| ||||| || ||||| | Sbjct 48830 AGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGACCTGGGCACTCGT 48771 Query 31972 TGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCA 32031 ||||| | ||||||||| || | | ||| || | ||||||||| || ||| | Sbjct 48770 TGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGGA 48711 Query 32032 GCCACATCGCGTAAAACAG 32050 ||| | ||||| || || Sbjct 48710 CCCAGAGGGCGTAGAAGAG 48692 >seq27 Length=191231 Score = 109 bits (120), Expect = 1e-18 Identities = 135/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||| | | ||||||| |||| ||||| | ||||| |||||||| Sbjct 124794 TAACGCCAGAGCATGTAGTCGAGGGGGGTCTTGTCGAGGTGCTGGTCAATGTGGTGGAAG 124735 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGT 225096 || |||||||| |||||| | ||| || ||||||||||||||||| | | || ||| Sbjct 124734 GCGTGCTGGGCGACGTACCCGATGACCAAGTTGGGATGCTTCCACATCTCA--CCGGAGC 124677 Query 225097 C-GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGC 225155 | || | | |||||| || || ||||| |||||| | ||| |||| || ||||||| Sbjct 124676 CGGGCTCGGTGTCGCCGACGACGAGCTTGACGAGCGTCGACTTACCCGAGCCGTTGGGGC 124617 Query 225156 C 225156 | Sbjct 124616 C 124616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921554061699040