Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 466 3e-126 seq21 327 2e-84 seq22 89.7 1e-12 >seq4 Length=437454 Score = 466 bits (516), Expect = 3e-126 Identities = 1130/1693 (67%), Gaps = 71/1693 (4%) Strand=Plus/Minus Query 243766 CTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCAT 243825 |||||| | ||||||||| | ||||||||||| || | |||| ||| || |||||| Sbjct 49939 CTTGGTGCGCAGGTAGTAGGTACCGGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCAT 49880 Query 243826 GGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGA 243885 | || |||| | | || || | || | ||| || |||||| || Sbjct 49879 CGAGGTGAGCTGGCCGAACGTGGGC-----GCCG-------AGAGATGGATGTTGAGCGA 49832 Query 243886 CTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGA-- 243943 ||| |||| || ||||| | || || ||||||||| ||||| | ||||||| Sbjct 49831 CTGCGACTGGCAGATGAAGGCACCGCGGTCGGCGGCCATGTCGATGATGGCCTTCTGGCT 49772 Query 243944 GATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTC 244003 ||| || || ||| |||||||||| ||||| | | ||||||| || | |||| Sbjct 49771 GATCTCCCAGACG--GTCTTGTAGAGCTTCTTGATGCGGTCGGGGATGCCGGGCACGTTC 49714 Query 244004 TGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCC--- 244060 || | || || |||| |||||| || | ||| | |||||||||| |||| Sbjct 49713 TGGATGGAACCGCCGTGGGCGATGATGCGGTTCTTCATCGTGTCGTTCCACAAGCCCTGC 49654 Query 244061 ---AAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGC 244117 | | |||| ||| | |||| | | || |||||||| ||||| || | ||| Sbjct 49653 TCGACGAGCTC--GCGGAGCAACCAAGGG----TTGACCACCTGGAACTCACCGGCGAGC 49600 Query 244118 ACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATC 244177 || || ||| ||||| |||| | || ||||||| || ||| || |||| ||| Sbjct 49599 ACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGAAACCCAAGATC 49540 Query 244178 TGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTC 244237 || || ||||| ||||| || | | || || ||| | | |||||| | Sbjct 49539 TGACTGGTCGAGGCAGTAGGCATAGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGCTTG 49480 Query 244238 TGGATGCGGAGTCT-GAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAG 244296 ||| | || || |||||| ||||||||| | | |||| ||| ||| || Sbjct 49479 GCGAT-CTTAGCCTTGAGCTCTGCCCAGTCCCAGAGGTCCGA-AGG------CGT--GAC 49430 Query 244297 GCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA 244356 |||||||||||| |||||||| |||| | | || ||| |||||||| ||| Sbjct 49429 GCCCCACATGTCGTACTGCAGCTCACCCTGCGAGGCAGGCGAGCCAGCGTAGGTCTCGTA 49370 Query 244357 GGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGT-CGAGGGCGGCGTAGTAGATGGTCT 244415 || |||| ||| ||||||| || | |||| ||||||| |||| ||||||||||| Sbjct 49369 GGTGCCGTGCTCCTGAGCCAGCTCGCA-CGATCGTTCGAGGGCAGCGTGGTAGATGGTCT 49311 Query 244416 CGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCA 244475 | |||||| ||| | | || |||| | | |||| | |||||| |||| Sbjct 49310 CAAAGATCTGTACGTTGAGGCGACGAGCCTCGGGCGACTCAAAGGCGTAGCCCATGATCA 49251 Query 244476 TGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGC 244535 ||||| ||||||| || || || || ||||| || ||||| | ||| ||| ||||||| | Sbjct 49250 TGAAGGCGTCGGCGAGACCTTGGACACCGATACCAATGGGGCGGTGGCGCATGTTGGATC 49191 Query 244536 GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTT---GCGGG 244592 ||| || || || || ||||| ||| || | ||||||||| || || | Sbjct 49190 TGCGGGCCTCCTCGACAGGATAGTAGTTGATGTCAATGATCTTGTTGAGATTCTTGCAGA 49131 Query 244593 TGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGA 244652 || | || |||| || || ||| ||||||||| | | | ||||| Sbjct 49130 TGGCCTTGGCGACGCTGTGA---AGACGCTTGAAGTCGTAC-------GTT--TTGGCGA 49083 Query 244653 TGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCT 244712 | | || | ||| | ||||||| |||||||||||||||||| ||||| | Sbjct 49082 CAGGG-TCG--ATAAAGGTGGGCAGGGCGATTGAGGCCAGGTTGCAGACGGCAACCTCGT 49026 Query 244713 CCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGT 244772 | | | | |||||| || ||||||||||| | ||| ||||||||||||||| |||| Sbjct 49025 CGGGGGCGCTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGT 48966 Query 244773 GCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCT 244832 || || ||| |||| |||| |||||||||||||| |||||||| ||||||| Sbjct 48965 TCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCT 48906 Query 244833 CGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC--TGCGAGC 244890 || |||| |||||| | || |||||| | | |||||||| || | | |||| Sbjct 48905 CGGTCTGGCACTCGAGGATGGCGTACCAGAGCTTCTGCGCCTTGACGGTTCGCTTGGAGC 48846 Query 244891 CTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTC 244950 ||||| ||||||||||| ||| ||| ||| |||||| ||| || ||| | Sbjct 48845 GA--CCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCGGC 48788 Query 244951 TAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTG 245010 || || |||||| ||||||||||| ||| |||||| | || |||||||| Sbjct 48787 GAGACCTGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTT 48728 Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||||||||| ||||||| ||||||||| | |||||| || | || | | ||| ||| Sbjct 48727 CATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCACGGGCACGCATCTCTTCCTT 48668 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 ||| ||| || | || || | || |||||||| || |||||| ||||| ||||| Sbjct 48667 GCCGTGGTTTTTGCGGAGATCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATGTA 48608 Query 245131 GACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC-GCGT 245189 || || | ||| || || ||||||||||| |||||||| | | | || || | || Sbjct 48607 GATGGCAAAGGCACCCGGACGCTTGTTGCCACCCTGGTCGA----CGTAGCGGGCAGTGT 48552 Query 245190 TG---AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGT 245246 || |||| ||| || | || || || |||||| | ||||||||||| ||||| Sbjct 48551 TGTTAAAGACGCGGAGCATGGGTACGATACCGTTACTGACACCGTTGGTGCCGGCGATGT 48492 Query 245247 AGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGA 245306 | | ||| | || | | | | |||| | || | || |||||| |||||||| Sbjct 48491 ACGAGCCGGTACCGCGAATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGA 48432 Query 245307 TGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGA 245366 | | ||| || |||||| ||||| ||||| || || ||| ||||||| ||| Sbjct 48431 TCATGGCACACGTCTTGAGCGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATGGTGA 48372 Query 245367 GCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGG 245426 ||| ||||| || || ||||| || | || | | | |||||| || ||||| || Sbjct 48371 CCAGGAAGCACGACGAGAGCTGTGGGTGTGGTGTACCAGCGTTGAAGAGGGTGGGCGAGG 48312 Query 245427 CGTGGGTAAAGTA 245439 ||||||||||||| Sbjct 48311 CGTGGGTAAAGTA 48299 >seq21 Length=224232 Score = 327 bits (362), Expect = 2e-84 Identities = 596/856 (70%), Gaps = 26/856 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||| |||||||| ||||| Sbjct 32965 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 32906 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCT--GAGAACGAAA---AGTTTTTCCTC 42413 ||||||| || |||||| || || || ||||| | ||| || | Sbjct 32905 TCCAAGGATCTTCACGACTGGGACAACAAGCTCAACGACAACGAGCGCCACTTTATCTCC 32846 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACC 42473 | | | || || ||||||||||| || ||||| || ||||| |||||||| | | Sbjct 32845 CA---CGTCCTTGCTTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTAGTCGAG 32789 Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCC 42533 | |||| || || ||| ||||| |||||||||||||| |||||||| Sbjct 32788 CGTTTCAGCTCCGAAGTTCAGGCTGCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATG 32729 Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593 || |||||| | ||||| ||| ||| | || || || ||||||| | || ||| Sbjct 32728 ATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACTCGTACATTCGCGAACCC 32669 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 | ||||| | || || | ||| | ||||| || ||| | ||||| ||||||| Sbjct 32668 GAGCAGCGTGAATTCCTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAAGGCC 32609 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| || |||||| || | | | ||| || || | |||| | || || || Sbjct 32608 GACTGGGCTCTTCGATGGATC-AGCGACAGGCGCGCCACCTTTGCCGAGCGTCTCGTTGC 32550 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 || ||||||||||||||||||||||||||||| |||| || ||||||||||||||||| Sbjct 32549 TTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTGCATCCATCTTCTGGCTCAA 32490 Query 42773 GCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || ||| || |||||||| || |||||||| ||||| |||||| | | ||||||| Sbjct 32489 GAAGCGTGGTCTC-ATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 32431 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA-CAAGCCCTCG 42890 | || || | |||||||||||| | || ||| |||||||||| | | | |||| | Sbjct 32430 GTCTTCACACCGACTTTGCCTGCTTGCTCTTC---AGCCACCTCAAGAAGCGCGCCCAC- 32375 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 || |||| ||||||| |||||||| || ||||| |||| ||| | || Sbjct 32374 CCCGACACTGTCCTCAAGATCATCAGCGAGGCCGTCGAAATCGAAAAGGCTTTCTTGACA 32315 Query 42951 CAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 || ||||||| | || | ||||||||||| | ||||||| ||||||| || Sbjct 32314 GAGAGCTTGCCCGTAGCGCTCATTGGCATGAACCAGAAGGCCATGTGCCAGTACATTGAG 32255 Query 43011 TACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTCAGCCG--CCTCTACAACACGCC 43066 ||||| || |||| |||| || | || | || | ||| || |||| | | | Sbjct 32254 TACGTGGCTGACCGTCTCTTGGTTTCC--CTCGG--AAACCCGGTCCACTACGGCGCCAC 32199 Query 43067 GTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAA 43126 ||||| |||||||||||| | |||||| || | || ||||||||||| || ||||| Sbjct 32198 ATGCCCATTCGACTTTATGACGTCGATCTCGCTGCAAGGTAAGACCAACTTCTTTGAGAA 32139 Query 43127 GCGCGTCGCCGACTAC 43142 | |||||||| ||| Sbjct 32138 GAAGGTCGCCGAATAC 32123 >seq22 Length=209478 Score = 89.7 bits (98), Expect = 1e-12 Identities = 234/341 (69%), Gaps = 17/341 (5%) Strand=Plus/Minus Query 242948 GTTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCT-GCTCAACAAGA 243006 |||||| || |||||||| ||||||| |||||| |||| || ||||| ||||| | | Sbjct 183964 GTTCCCAGAGAGGACCACGGCGATCGGTCAGATGGTCAATTCCTACCTCGCTCAG-ACCA 183906 Query 243007 GCGATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA---GCCG 243063 |||| | |||||||| | | | || || || || ||||||||||| |||||| | | Sbjct 183905 GCGACTTAGACGATCAAGCCATTCATCTGCTCTTTTCGGCCAACCGCTGGGAACGTGTTG 183846 Query 243064 CCTCCGACCTGAAGCGCAAGCTGATGAAGGGTACCACCATCGTGCTCGACCGCTACGCGT 243123 ||||| | || || | || | ||| | | |||||| ||| |||||||| | Sbjct 183845 CCTCC-ATTCATAGGACACTC-GAAGCAGGCGA-GAGCATCGTCTGCGATCGCTACGCCT 183789 Query 243124 TCTCCGGCGTAGCCTTCACGGCGGCGAAGCCCGGGTTCGAGCTCGAGTGGTGTAAGCGAA 243183 |||||||| | || | | | ||||| ||| | | ||| |||||| || | Sbjct 183788 TCTCCGGCATCGCTTATTCCGTTGCGAA---AGGGCTTTCGTACGACTGGTGT-CGCAAT 183733 Query 243184 CC-GACGTGGGTCTGCCCAAGCCCGACCTGGTGGTGTTCCTGGCCATCGAGGCCTCCGCC 243242 || || || ||||||||| ||| || || ||||||| | |||| ||| | | | Sbjct 183732 CCAGATGTAGGTCTGCCCTTGCCGGATCTCACCATGTTCCTCGATCTCGATGCC-CAGAC 183674 Query 243243 GTGGAG-AGCA-GAGGCGGCTTCGGCGACGAGCGGTACGAG 243281 || || |||| ||||||| | ||||| ||| | |||||| Sbjct 183673 -TGCAGCAGCACGAGGCGGATATGGCGAGGAGAGATACGAG 183634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944269177248320