Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10 134 3e-26 seq67 127 5e-24 seq62 120 7e-22 >seq10 Length=322828 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||| || || ||||| || || || | | Sbjct 156568 CCACCACGCAGACGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGAG 156627 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| |||||||| | || || || || ||||| || ||||| ||| | ||| Sbjct 156628 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGA 156687 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || || ||||| || || | ||| || || || Sbjct 156688 ATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACC 156747 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || ||||||||||| || |||||||| Sbjct 156748 TCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || || || | ||| || || || || || ||||||| Sbjct 156340 CCTCCACGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 156399 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | || ||||| || ||||| || ||||| || | ||| Sbjct 156400 AAAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGA 156459 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || || || || ||||| || || | || |||||| || Sbjct 156460 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGACC 156519 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| ||||||| |||||||| || |||||||| Sbjct 156520 TCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 >seq67 Length=99859 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | || ||| || ||||| || ||||| | | Sbjct 38320 CCACCACGGAGACGGAGGACCAAATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 38379 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || ||||| |||||||| || || || ||| || Sbjct 38380 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGGCGTTGCTGATCGGGAGGA 38439 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | ||| || ||||| Sbjct 38440 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCTACC 38499 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||||| ||||| ||||| || |||||||||||||| || |||||||| || Sbjct 38500 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTGACAAAGATCTGCATGAT 38549 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||||| | || || |||| || ||| || || || || ||||| | | Sbjct 38092 CCACCGCGGAGTCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGAG 38151 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || ||||| ||||| |||||||| ||| | || Sbjct 38152 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGGA 38211 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | || ||||| || Sbjct 38212 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGACC 38271 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || |||| |||||||| || |||||||| Sbjct 38272 TCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || ||||| || | ||||| || || || || || || |||| Sbjct 37636 CCGCCACGGAGACGGAGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGAA 37695 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| || || || || || |||||||||||||| || | |||| Sbjct 37696 AGAGTGCGACCATCTTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 37755 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | || || || ||| Sbjct 37756 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACT 37815 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || || || || |||||||| || |||||||| Sbjct 37816 TCCAATGTGATGGTTTTGCCAGTGAGCGTCTTGACAAAGATCTGCAT 37862 >seq62 Length=112892 Score = 120 bits (132), Expect = 7e-22 Identities = 658/1017 (65%), Gaps = 54/1017 (5%) Strand=Plus/Plus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 325401 ||||||||| || |||| | | |||||| |||||| || | | |||||| ||| Sbjct 19353 ATCCTTACCGCCAAGCAAACGGGTACCGAATTGGCCCCGGGGTTCGAGCAAGTTGACGTT 19412 Query 325402 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGC--AGAGATGCTTCG 325459 ||||| || ||| | | |||||| ||| || || ||| ||| || | ||||||| Sbjct 19413 GTTGCTACCCACAAAGTTCTGTGCGAGGCCGACAATAGTCA--TGCTAAGCGCTGCTTCG 19470 Query 325460 CCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCA-ACCTTCACGTC 325518 |||||||||||||| || | || | |||| || |||| ||||||| || Sbjct 19471 CCATGGTGATAGGCTGCCTGACCCAGGACATTACCGACGAG-TGTGTTGACCTTCAACTC 19529 Query 325519 GGTCGTCAAATTGCGCTTGAAAGCTGAA-TATATCACTTTCCGTTGAGAAGGTTTGAAAC 325577 || | ||||| | ||| ||| || || ||||| || ||| ||| |||| || Sbjct 19530 GGCGTTGCTCTTGCGGTC-AAACATGACGTACATGACTTTTCGCTGACCAGGCTTGAGAC 19588 Query 325578 CATCAACGACCGACGGAATGCTTCGTTCCAGATCGTA---CCGCGAGAACAAAATAAGTT 325634 |||| |||||||| |||||| || || || || | |||||| | || || | Sbjct 19589 CATCGACGACCGAAGGAATGGAACG---CAAATTGTCGGCCATCGAGAAGAGGATGAGCT 19645 Query 325635 CCTTGTCGATGAAGTCGGGA-ACGGGAACCT--CGGGCTTCTTGTGGTCAAGTTGATTTC 325691 |||||| ||| ||||||| | | |||| | | ||| | |||||||| || | | | Sbjct 19646 CCTTGTTGATAAAGTCGGCATAAGGGATCTTGTCGG---TGTTGTGGTCGAGGTAGGTGC 19702 Query 325692 CTGGTTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAAAG 325748 | || | | || || | |||||| || ||||| ||||| || | |||||| || | Sbjct 19703 CGGGACGGAACTGTCGA-AGCCACTCTTTTCGATCGTCGGCCTTCTT--CTTGTTAAAGG 19759 Query 325749 AACGGTCAATGAGCTCTC---CGGAATCGGAAGTCCACAT-AAACGTCTTCATGAGAGAC 325804 | || |||||||| | || ||| ||| || | ||| | | || | | Sbjct 19760 CGAGATCGATGAGCTCACGATCGCCATCTCGAGTG-ACGTCAAAAGCGAGCTTGTGCTTC 19818 Query 325805 TTCAGATTGCTGAAGTATTTTTTGGCATCTGCACTGGAACTCG----TACCAAGCCCCTT 325860 | || || ||||||| |||||| || |||| ||||| |||| || ||||| Sbjct 19819 TCAAGGGCGCGGAAGTATCGTTTGGCGTC----CTGGGACTCGGAGGTACCGAGACCCTT 19874 Query 325861 AAAATACTTGGTCGTCCATTTCTTCATATC-TTGTGT-CTTCACG--AAGTCTTCGAAGT 325916 | |||||| | ||| || | | ||||| | || | | |||| || | | Sbjct 19875 GTAGTACTTGATATGCCAGCCTTTGCCACCGTTGTGCGCGTCCCTCCAGGTCT-CGTACT 19933 Query 325917 CAGGAAGACTGAAAAATTCTCTGACTTCTTTTCCCTTCCTGGCAACT-ACGATAGGCGTG 325975 | || | |||| || | | || ||||| ||| || || || || || ||| Sbjct 19934 CGGGGATGGTGAAGAAAGAGAGATCCTGCTTGCCCTTTCTG-CATCTGACAATGGGTGTG 19992 Query 325976 ATGAACTTCTTCAAG-AACCCTGGAATTTCTAGAAGATTAGGGAAACAGCTATGGAAAAA 326034 ||||||| | |||| || || || |||| || | ||| || || | || || Sbjct 19993 ATGAACT-CGACAAGGAAGCCCGGGATTTTGAGCAACGAGGGGTAAAAGTGGTCGAGGAA 20051 Query 326035 GTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCAC 326094 ||| |||| |||||| ||||| | ||||| |||| |||||||||||||| | Sbjct 20052 GTTGATGATGAGACCCTTGATGTGCGAACCGTCGTGATCCTGATCGGTCATGATCATGAT 20111 Query 326095 ATGACCGTAACGAAGCGAG--GACGTGTCTTTGTACACTTTACCGGTTTGAAGGCCGAGA 326152 |||||||| || | ||||| | |||| || ||| ||||| || || Sbjct 20112 GCTGCCGTAACGCAGGCTGTTGACGT--CGAGGTACTGCTTGCCGTGCTGAAGACCCAGG 20169 Query 326153 ATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG-GATGCATCGCG 326211 |||| |||| || ||||||| |||| ||| |||| || | | | ||||| ||||| Sbjct 20170 ATTTCCTTGATTGCCTTGATTTCGGCGTTTTTCATGAT-CTGGTCGTGCGATGCCTCGCG 20228 Query 326212 GACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGA 326271 |||||| | || || || ||||| ||||| ||||| || | || | |||||| || Sbjct 20229 GACGTTGAGAAGCTTACCGCGAAGGGGGAATACTCCGTAGTTGTCCCTTCCGACCTCGAC 20288 Query 326272 CAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCA 326328 | || || | ||||| | || || || ||||| || |||||||| ||||| Sbjct 20289 GATACCGGCAACGGCAAGCGATTTGGCCGAGTCACCCTCGGTGAGAATGAGTGTGCA 20345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179564741841896