Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq62 116 8e-21 >seq62 Length=112892 Score = 116 bits (128), Expect = 8e-21 Identities = 657/1017 (65%), Gaps = 54/1017 (5%) Strand=Plus/Plus Query 297463 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 297522 ||||||||| || |||| | | |||||| |||||| || | | |||||| ||| Sbjct 19353 ATCCTTACCGCCAAGCAAACGGGTACCGAATTGGCCCCGGGGTTCGAGCAAGTTGACGTT 19412 Query 297523 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGC--AGAGATGCTTCG 297580 ||||| || ||| | | |||||| ||| || || ||| ||| || | ||||||| Sbjct 19413 GTTGCTACCCACAAAGTTCTGTGCGAGGCCGACAATAGTCA--TGCTAAGCGCTGCTTCG 19470 Query 297581 CCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCA-ACCTTCACGTC 297639 |||||||||||||| || | || | |||| || |||| ||||||| || Sbjct 19471 CCATGGTGATAGGCTGCCTGACCCAGGACATTACCGACGAG-TGTGTTGACCTTCAACTC 19529 Query 297640 GGTCGTCAAATTGCGCTTGAAAGCTGAA-TATATCACTTTCCGTTGAGAAGGTTTGAAAC 297698 || | ||||| | ||| ||| || || ||||| || ||| ||| |||| || Sbjct 19530 GGCGTTGCTCTTGCGGTC-AAACATGACGTACATGACTTTTCGCTGACCAGGCTTGAGAC 19588 Query 297699 CATCAACGACCGACGGAATGCTTCGTTCCAGATCGTA---CCGCGAGAACAAAATAAGTT 297755 |||| |||||||| |||||| || || || || | |||||| | || || | Sbjct 19589 CATCGACGACCGAAGGAATGGAACG---CAAATTGTCGGCCATCGAGAAGAGGATGAGCT 19645 Query 297756 CCTTGTCGATGAAGTCGGGA-ACGGGAACCT--CGGGCTTCTTGTGGTCAAGTTGATTTC 297812 |||||| ||| ||||||| | | |||| | | ||| | |||||||| || | | | Sbjct 19646 CCTTGTTGATAAAGTCGGCATAAGGGATCTTGTCGG---TGTTGTGGTCGAGGTAGGTGC 19702 Query 297813 CTGGTTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAAAG 297869 | || | | || || | |||||| || ||||| ||||| || | |||||| || | Sbjct 19703 CGGGACGGAACTGTCGA-AGCCACTCTTTTCGATCGTCGGCCTTCTT--CTTGTTAAAGG 19759 Query 297870 AACGGTCAATGAGCTCTC---CGGAATCGGAAGTCCACAT-AAACGTCTTCATGAGAGAC 297925 | || |||||||| | || ||| ||| || | ||| | | || | | Sbjct 19760 CGAGATCGATGAGCTCACGATCGCCATCTCGAGTG-ACGTCAAAAGCGAGCTTGTGCTTC 19818 Query 297926 TTCAGATTGCTGAAGTATTTTTTGGCATCTGCACTGGAACTCG----TACCAAGCCCCTT 297981 | || || ||||||| |||||| || |||| ||||| |||| || ||||| Sbjct 19819 TCAAGGGCGCGGAAGTATCGTTTGGCGTC----CTGGGACTCGGAGGTACCGAGACCCTT 19874 Query 297982 AAAATACTTGGTCGTCCATTTCTTCATATC-TTGTGT-CTTCACG--AAGTCTTCGAAGT 298037 | |||||| | ||| || | | ||||| | || | | |||| || | | Sbjct 19875 GTAGTACTTGATATGCCAGCCTTTGCCACCGTTGTGCGCGTCCCTCCAGGTCT-CGTACT 19933 Query 298038 CAGGAAGACTGAAAAATTCTCTGACTTCTTTTCCCTTCCTGGCAACT-ACGATAGGCGTG 298096 | || | |||| || | | || ||||| ||| || || || || || ||| Sbjct 19934 CGGGGATGGTGAAGAAAGAGAGATCCTGCTTGCCCTTTCTG-CATCTGACAATGGGTGTG 19992 Query 298097 ATGAACTTCTTCAAG-AACCCTGGAATTTCTAGAAGATTAGGGAAACAGCTATGGAAAAA 298155 ||||||| | |||| || || || |||| || | ||| || || | || || Sbjct 19993 ATGAACT-CGACAAGGAAGCCCGGGATTTTGAGCAACGAGGGGTAAAAGTGGTCGAGGAA 20051 Query 298156 GTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCAC 298215 ||| |||| |||||| ||||| | ||||| |||| |||||||||||||| | Sbjct 20052 GTTGATGATGAGACCCTTGATGTGCGAACCGTCGTGATCCTGATCGGTCATGATCATGAT 20111 Query 298216 ATGACCGTAACGAAG--CGAGGACGTGTCTTTGTACACTTTACCGGTTTGAAGGCCGAGA 298273 |||||||| || | ||| ||| |||| || ||| ||||| || || Sbjct 20112 GCTGCCGTAACGCAGGCTGTTGAC--GTCGAGGTACTGCTTGCCGTGCTGAAGACCCAGG 20169 Query 298274 ATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCACG-GATGCATCGCG 298332 |||| |||| || ||||||| |||| ||| |||| || | | | ||||| ||||| Sbjct 20170 ATTTCCTTGATTGCCTTGATTTCGGCGTTTTTCATGAT-CTGGTCGTGCGATGCCTCGCG 20228 Query 298333 GACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGA 298392 ||| || | || || || ||||| ||||| ||||| || | || | |||||| || Sbjct 20229 GACGTTGAGAAGCTTACCGCGAAGGGGGAATACTCCGTAGTTGTCCCTTCCGACCTCGAC 20288 Query 298393 CAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCA 298449 | || || | ||||| | || || || ||||| || |||||||| ||||| Sbjct 20289 GATACCGGCAACGGCAAGCGATTTGGCCGAGTCACCCTCGGTGAGAATGAGTGTGCA 20345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102796176984200