Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4 244 1e-59 seq21 143 3e-29 seq62 100 3e-16 >seq4 Length=437454 Score = 244 bits (270), Expect = 1e-59 Identities = 921/1421 (65%), Gaps = 33/1421 (2%) Strand=Plus/Minus Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 113974 |||||||| ||||| || | | ||||| |||| ||||| ||||| |||||||| Sbjct 49614 AACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCG 49555 Query 113975 TTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 114034 ||| ||||||||| || ||| ||||| || ||||| || || | | || ||| Sbjct 49554 TTGAAACCCAAGATCTGACTGGTCGAGGCAGTAGGCATAGGAGCGAGCAAGAGCGAGTTG 49495 Query 114035 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC 114094 || ||||| | | || ||||||| | ||||||| || | | | | Sbjct 49494 CGAAGACCGTGCTTGGCGATCTTAGCCTTGAGCTCTGCCCAGTCCCAGAGGTCCGAAGGC 49435 Query 114095 TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTC 114154 | |||||| || |||| || ||| || ||||| ||||| || | | ||| Sbjct 49434 GTGACGCCCCACATGTCGTACTGCAGCTCACCCTGCGAGGCAGGCGAGCCAGCGTAGGTC 49375 Query 114155 TCGTATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACAT 114213 ||||| | ||| | ||| |||| ||| | | ||| |||||||| ||||| || || Sbjct 49374 TCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGT-TCGAGGGCAGCGTGGTAGAT 49316 Query 114214 TGTCTCAAAAATGCGAGCATTCATTGCCTTG-GCCTCGTCGGAATCAAACGCG-AGTCGG 114271 |||||||| || | | || | || | |||||| || ||||| ||| || | Sbjct 49315 GGTCTCAAAGATCTGTACGTTGAG-GCGACGAGCCTCGGGCGACTCAAAGGCGTAGCC-- 49259 Query 114272 CACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 114330 || | || || | || ||||||||||||||||||| ||||| ||||| || | ||| Sbjct 49258 CATGATCATGAAGGCGTCGGCGAGACCTTGGACACCGATACCAATGGGGCGGTGGCGCAT 49199 Query 114331 ATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 114390 || || | || || ||| || ||||| | || | || || | | | || ||||| Sbjct 49198 GTTGGATCTGCGGGCCTCCTCGACAGGATAGTAGTTGATGTCAATGATCTTGTTGAGATT 49139 Query 114391 TTTGGTGACAACCTTTGTGA---TTTCATGAAGCTTT---TCGTAATCAAAACTGCGAGT 114444 ||| || |||| | || | | | || |||| ||||| | |||| Sbjct 49138 CTTGCAGATGGCCTTGGCGACGCTGTGAAGACGCTTGAAGTCGTA--CGTTTTGGCGA-- 49083 Query 114445 CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 114504 | | || | | | || ||||||||||| ||||| || || || | ||| || Sbjct 49082 --CAGGGTCGATAAAGGTGGGCAGGGCGATTGAGGCCAGGTTGCAGACGGCAACCTCGTC 49025 Query 114505 CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTT 114564 | ||||||| || || || || ||||| || || | ||| |||||||| | ||| Sbjct 49024 GGGGGCGCTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTT 48965 Query 114565 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 114624 ||| || || ||| ||| || |||||||| || ||| | || | || ||||| Sbjct 48964 CTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTC 48905 Query 114625 CGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTC 114683 || ||| ||| ||| || || | ||||| | || ||| || | || || |||| | Sbjct 48904 GGTCTGGCACTCGAGGATGGCGTACCAGAGCTTCTGCGCCTTG-ACGGTTCGCTTGGAGC 48846 Query 114684 GCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 114743 | ||||| ||||||| ||||||| |||||||| || || | || | || Sbjct 48845 GACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCGGCGA 48786 Query 114744 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCA 114803 | ||||| || | ||||| | ||| ||||| | || || ||| || | ||||| Sbjct 48785 GACCTGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCA 48726 Query 114804 TGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 114863 ||||||| || |||| |||||| || ||||||| || || || ||||| | | Sbjct 48725 TGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCACGGGCACGCATCTCTTCCTTGC 48666 Query 114864 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 | || || || | || | || || | || ||||| |||||| || || | ||| | Sbjct 48665 CGTGGTTTTTGCGGAGATCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGA 48606 Query 114924 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAA 114980 || | | ||| ||| ||| |||||| || || | || ||| |||| Sbjct 48605 TGGCAAAGGCACCCGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAA 48546 Query 114981 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGA 115038 | ||||| ||||| || | |||||| | | || || || || ||| |||||| Sbjct 48545 AGACGCGGAGCATGGGTACGATACCGTTACTGACACCGTTGGTGCCGGCGATGTACGAGC 48486 Query 115039 C-TTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 115097 | || | || || ||||||| | ||| ||||| || || ||| ||||| Sbjct 48485 CGGTACCGCGAATG-CA--GTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCA 48429 Query 115098 GCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAA 115157 || ||| | |||| || ||||||| |||||||||||||| |||| | | || | Sbjct 48428 TGGCACACGTCTTGAGCGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATGGTGACCA 48369 Query 115158 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 115217 ||||||| ||| | ||||| |||||||||||||||||||||||| || | |||| Sbjct 48368 GGAAGCACGACGAGAGCTGTGGGTGTGGTGTACCAGCGTTGAAGAGGGTGGGCGAGGCGT 48309 Query 115218 GGATGAA-CATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCC 115276 || | || || | |||||||| || ||| ||||| | | || ||||||| Sbjct 48308 GGGTAAAGTATTTC-TGGGACATGAGATTGTAAGTCTCGATGGCGCTCTCGATGTCTTGA 48250 Query 115277 CCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 ||||| || || | | ||| ||||| | ||||| ||| || Sbjct 48249 CCGTGGATGCCAACAGCGACACGCATGAGCATGTGTTGAGG 48209 >seq21 Length=224232 Score = 143 bits (158), Expect = 3e-29 Identities = 135/171 (79%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| ||||||||||||||||||||||| || || |||||| || || Sbjct 32411 GGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACC 32470 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| |||||||| | |||||| || | ||| || |||||||||||||| Sbjct 32471 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAAGAAGAT 32530 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGCGACT 126215 ||||| || ||||| |||| ||||||||| ||||||| ||||| || Sbjct 32531 GCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGGTGGCGCGCCT 32581 >seq62 Length=112892 Score = 100 bits (110), Expect = 3e-16 Identities = 292/446 (65%), Gaps = 18/446 (4%) Strand=Plus/Plus Query 172577 TTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAA 172636 ||||| | || || | |||| || || | || | |||||||||||| ||||| ||| Sbjct 20020 TTGAGCAACGAGGGGTAAAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGAA 20079 Query 172637 CCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCT 172696 || |||| |||| ||| ||||| ||||| | | || || || || | || || Sbjct 20080 CCGTCGTGATCCTGATCGGTCATGATCATGATGCTGCCGTAACGCAGGCTGTTGACGTCG 20139 Query 172697 TGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTT 172756 | |||| ||| || || |||||||||| ||| | ||||| | |||| || |||| Sbjct 20140 AGGTACTGCTTGCCGTGCTGAAGACCCAGGATTTCCTTGATTGCCTTGATTTCGGCGTTT 20199 Query 172757 GATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAAC 172816 ||| || | || || |||||||| || | ||| || || || ||||| Sbjct 20200 TTCATGATCTGGTCGTGCGATGCCTCGCGGACGTTGAGAAGCTTACCGCGAAGGGGGAAT 20259 Query 172817 ACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAA 172876 || ||||||| || | || ||| | | ||| ||||| || || | || || || Sbjct 20260 ACTCCGTAGTTGTCCCTTCCGACCTCGACGATACCGGCAACGGCAAGCGATTTGGCCGAG 20319 Query 172877 TCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC------CCCGCCTTG 172930 |||||||| || | ||||| || || ||| ||| ||| || || || ||| Sbjct 20320 TCACCCTCGGTGAGAATGAGTGTGCA--GTCC---TTG-GCCTTCCTGCCACCGGCGTTG 20373 Query 172931 TTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGG---ACTTGCGGGCACCATCTGTC 172987 || ||||| || | |||||| || || ||| ||| |||| || || || ||| Sbjct 20374 TTGGCATCTTCGAGCTTGGGGATGTTGGTGATTCTGGTTCGCTTGTGG---CCGTCGGTC 20430 Query 172988 TTCTTGAGTTCCTTCATCTCCTTGAA 173013 |||||||| ||| || |||||| Sbjct 20431 TTCTTGAGCGCCTGATCCTGCTTGAA 20456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597309306230560