Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq67 140 4e-28 seq10 131 2e-25 >seq67 Length=99859 Score = 140 bits (154), Expect = 4e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 ||||| ||||||||||| ||||| |||||||| | ||||| || | || || | |||| Sbjct 37660 TGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTGC 37719 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 |||||||| || || || ||||||||||| | ||| | | |||||||||| ||| || Sbjct 37720 TTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTG 37779 Query 42126 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 |||| ||| | | | |||||| || || || || | |||||||||||||| || Sbjct 37780 GCCTTGA-CGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGT 37838 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 |||||||| |||||||| ||||| Sbjct 37839 GAGCGTCTTGACAAAGATCTGCAT 37862 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 ||||| ||||||||||| ||||| ||||| || | || || || |||| || |||||| Sbjct 37888 TGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGCTGC 37947 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 ||||| || || || | ||||||||||| | ||| | | ||||||||| ||| || Sbjct 37948 TTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATCTTG 38007 Query 42126 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 |||| ||| | | | |||||| || || || || | ||| || || || ||||| Sbjct 38008 GCCTTGA-CGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTCTTTCCCGT 38066 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||||||||| ||||| Sbjct 38067 GAGTGTCTTTACAAAGATCTGCAT 38090 >seq10 Length=322828 Score = 131 bits (144), Expect = 2e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||| |||| |||| ||| |||||| ||||| ||||| || | Sbjct 156339 ACCTCCACGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 156398 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || || |||||||| ||||| || ||||||||||||||||| | ||| Sbjct 156399 CAAAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGG 156458 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | || ||||||||| ||| | || | |||| ||| | | | ||||| |||||| Sbjct 156459 AATGCCTTCCTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGATTCG 156516 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| ||||| || ||||| || | ||||| |||||||| ||||| Sbjct 156517 ACCTCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||||| || || || |||| || |||||||| || || || Sbjct 156603 CTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAA 156662 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 |||||||||||||| || | ||| | | |||||| ||| ||| || |||| ||| Sbjct 156663 GATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATCCTGGATCTTGGCCTTGA-CGT 156721 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| |||||||| |||||||| || ||||| | Sbjct 156722 TGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGA 156781 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 156782 CAAAGATCTGCAT 156794 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | || || || |||| || ||||||||||| || || Sbjct 83702 CTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCAAA 83643 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | | |||||||||| ||| || |||| | Sbjct 83642 GATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 83583 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || || || |||| |||||||| || ||||| || ||||| || Sbjct 83582 GTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 83523 Query 42197 AAAGATTTGCATTTT 42211 |||||| ||||| || Sbjct 83522 AAAGATCTGCATCTT 83508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543172520770880