Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq67 114 1e-20 seq10 109 5e-19 seq18 84.2 2e-11 >seq67 Length=99859 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || | || || |||| |||||||| || ||||||||||| || | Sbjct 38091 ACCACCGCGGAGTCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGA 38150 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| |||| || ||||||||||| ||| | ||||| |||||||| || ||||| Sbjct 38151 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGG 38210 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | || || | || || Sbjct 38211 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGAC 38270 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| ||||| || || || || || ||||| Sbjct 38271 CTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| |||||||||| ||| || || || | || || || ||||||||||| || | Sbjct 37863 ACCTCCGCGCAATCGAAGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGA 37922 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| ||||||| |||||||| |||||| | || | ||||||||||| || || Sbjct 37923 GAGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGG 37982 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| || || || || || Sbjct 37983 GATACCTTCCTTGTCCTGGATCTT 38006 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||| || || |||||||| || | || ||| || |||| || |||||||| || Sbjct 38350 GTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCA 38409 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| || ||||| ||||||||||| || || || || || || || ||| Sbjct 38410 GCGAAGATGAGGCGTTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 38469 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || | || || || | || | |||||| || |||| ||| Sbjct 38470 ACGTTGTCGATCGTGTCGGAAGACTCTACCTCGAGGGTGATGGTCTTACCAGTCAGAGTC 38529 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 38530 TTGACAAAGATCTGCAT 38546 >seq10 Length=322828 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | |||||| || || || ||||||||||| | Sbjct 156567 ACCACCACGCAGACGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGA 156626 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| ||||||| ||||||||||||||| | ||||| |||||||| || || || Sbjct 156627 GAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGG 156686 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | || || || || || Sbjct 156687 AATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGAC 156746 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | ||| || || || || ||||| Sbjct 156747 CTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| || || | ||||| || || ||||||||||| || | Sbjct 83738 ACCACCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 83679 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||| || |||||||| |||||| | || || |||||||||||||| || Sbjct 83678 AAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGG 83619 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 83618 GATACCCTCCTTGTCCTGGATCTT 83595 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || | | ||||| | || || |||||||| || Sbjct 156370 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCA 156429 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||||||||| || ||||| ||||| || || || || || ||| Sbjct 156430 GCAAAGATGAGTCGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTG 156489 Query 64367 ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 || || | || | ||| || || || || | ||| | |||||||||||||| | Sbjct 156490 ACGTTGTCGATGGTGT--CCGACGATTCGACCTCGAGAGTGATCGTCTTGCCGGTCAAGG 156547 Query 64425 TTTTTACGAAAATTTGCAT 64443 | || || || || ||||| Sbjct 156548 TCTTGACAAAGATCTGCAT 156566 >seq18 Length=237310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | ||||| || || || |||||||| || | Sbjct 132621 ACCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 132562 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| |||| || |||||||| |||||| | || || |||||||||||||| || Sbjct 132561 GAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGG 132502 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 132501 GATACCCTCCTTGTCCTGAATCTT 132478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499607751338080