Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4 311 9e-80 >seq4 Length=437454 Score = 311 bits (344), Expect = 9e-80 Identities = 1172/1823 (64%), Gaps = 54/1823 (3%) Strand=Plus/Plus Query 93733 TTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACCG 93792 ||||| || || ||| || ||||| ||| || | || | ||| | ||||| || Sbjct 48152 TTCAAGACGCTCGAGCGTTCCTACCTGCTCCGCATCAACGGAAAGGTCGCTGAGCGTCCT 48211 Query 93793 CACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCGAATGTTTTG 93852 || || |||| ||||| ||||| | || || ||||| || ||||| || | | Sbjct 48212 CAACACATGCTCATGCGTGTCGCTGTTGGCATCCACGGTCAAGACATCGAGAGCGCCATC 48271 Query 93853 CGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACCCTGTTCAAC 93912 | ||| || |||| | || | |||| ||| | || ||||| |||||| Sbjct 48272 GAGACTTACAATCTCATGTCCCAGAAATACTTTACCCACGCCTCGCCCACCCTCTTCAAC 48331 Query 93913 GCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCC 93972 || || || || |||||| | || ||||| |||||| | || | |||| |||||| Sbjct 48332 GCTGGTACACCACACCCACAGCTCTCGTCGTGCTTCCTGGTCACCATGAAGGACGACTCG 48391 Query 93973 ATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGA 94032 ||| ||| || | ||||| |||||| ||||| | ||||| || ||| || || Sbjct 48392 ATCGACGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACCGCCGGTGGT 48451 Query 94033 ATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGC 94092 ||||| ||| ||||| | | || | | || || |||||| ||| ||||| || Sbjct 48452 ATCGGTCTCAACATCCACTGCATTCGCGGTACCGGCTCGTACATCGCCGGCACCAACGGT 48511 Query 94093 ACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGAC 94152 | ||||| |||| || |||||||| ||||| |||||| | || |||||||| ||| Sbjct 48512 GTCAGTAACGGTATCGTACCCATGCTCCGCGTCTTTAACAACACTGCCCGCTACGTCGAC 48571 Query 94153 CAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGAC 94212 |||||||| | | | |||| | || || |||| | ||||| |||||| |||| Sbjct 48572 CAGGGTGGCAACAAGCGTCCGGGTGCCTTTGCCATCTACATTGAGCCATGGCACTCGGAT 48631 Query 94213 GTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGAC 94272 || | ||| |||| || || || ||||||||||| || | | | ||| | || Sbjct 48632 GTCTTTGAGTTCCTCGATCTCCGCAAAAACCACGGCAAGGAAGAGATGCGTGCCCGTGAG 48691 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCC 94332 ||||||||||| |||||||| || || || || ||||| | |||||| | ||| || | Sbjct 48692 CTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAACGGCGAC 48751 Query 94333 TGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC-GTTTGTGGATCGCGTTT 94391 ||| || | || ||||| || || || || || ||||| | | | || | || Sbjct 48752 TGGTCGCTCATGTGCCCCAACGAGTGCCCAGGTCTCGCCGACTGCTACGGCGACGAG-TT 48810 Query 94392 TGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA---GGAAGGTTATGGATGC 94448 ||| | | || | || ||||| | |||| ||| | | || | | || Sbjct 48811 TGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCAAGCGAACCGTCA---AGGC 48867 Query 94449 TAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTT 94508 |||||| ||| | ||| | || ||| ||||| || | |||| |||| | Sbjct 48868 GCAGAAGCTCTGGTACGCCATCCTCGAGTGCCAGACCGAGACCGGCAACCCCTTCATCCT 48927 Query 94509 GTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTC 94568 | ||||||| ||| |||| |||| ||||||| || ||||||| |||||| |||| Sbjct 48928 CTACAAGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGTGCTC 48987 Query 94569 GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCT 94628 || ||||||||||||| ||||||| | | || |||||| |||| || || ||||| Sbjct 48988 CAACTTGTGCACCGAGATCATCGAGTACAGCGCCCCCGACGAGGTTGCCGTCTGCAACCT 49047 Query 94629 GGGCTCCATCAACCTGTCCAC---TTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTT 94685 || ||| ||| |||| |||| | ||| | | ||| | ||| ||| |||| Sbjct 49048 GGCCTCAATCGCCCTGCCCACCTTTATCGACCCTGTCGCCAAAACG--TACGACTTCAAG 49105 Query 94686 CGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTCTTGAACCTGAACAGGGTA 94743 || ||| | ||| | || |||| || | ||| || |||| | | Sbjct 49106 CG-TCTTCA-CAGCGT----------CGCCAAGGCCATCTGCAAGAATCTCAACAAGATC 49153 Query 94744 ATCGACAAGAACTTCTACCCCGTCCCGGAGG--CGGAGAACTCAAACCTGAAGCATCGGC 94801 || |||| |||| ||| || ||| ||||| || ||| || ||| || || || | Sbjct 49154 ATTGACATCAACTACTATCCTGTCGAGGAGGCCCGCAGA--TCCAACATGCGCCACCGCC 49211 Query 94802 CCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGC-CCTAC 94860 |||| || ||||| ||||| ||| |||| ||||| | |||| ||| | || | ||| Sbjct 49212 CCATTGGTATCGGTGTCCAAGGTCTCGCCGACGCCTTCATGATCATG-GGCTACGCCTTT 49270 Query 94861 GACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCC 94920 || || ||| || | | || | | || || || | ||| || ||| ||| Sbjct 49271 GAGTCGCCCGAGGCTCGTCGCCTCAACGTACAGATCTTTGAGACCATCTACCACGCTGCC 49330 Query 94921 ATGAAACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATCGTTCCGCGG 94979 | ||| ||| | | |||| || ||| ||| | |||| | | | || Sbjct 49331 CTCGAACGATCGTGCGAGCTGGCTCA----GGAGCACGGCACCTACGAGACCTACGCTGG 49386 Query 94980 ATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGT 95037 ||||| | | | ||||| | |||| |||| | ||||| || | ||| |||| Sbjct 49387 CTCGCCTGCCTCG--CAGGGTGAGCTGCAGTACGACATGTGGGGCGTCACGCCTTCGGAC 49444 Query 95038 CTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTG 95097 || | ||||||| || || ||| | | ||| |||||| | ||| |||| Sbjct 49445 CTCTGGGACTGGGCAGAGCTCAAGGCTAAGATCGCCAAGCACGGTCTTCGCAACTCGCT- 49503 Query 95098 CTTG-TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTT 95156 |||| | || || ||||| || ||||| || |||||| | || |||||||| || Sbjct 49504 CTTGCTCGCTCCTATGCCTACTGCCTCGACCAGTCAGATCTTGGGTTTCAACGAGTGCTT 49563 Query 95157 CGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCAT 95216 ||| || | |||||||||| | ||| | || ||||||||||| || |||| || | Sbjct 49564 CGAGCCTTACACCTCCAACATCTACTCGCGTCGTGTGCTCGCCGGTGAGTTCCAGGTGGT 49623 Query 95217 CAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGTGGGGTGACAAGGTCAAG 95274 |||| | || || || || |||| | ||| ||||| |||| | | ||| Sbjct 49624 CAACCCTTGGTTGCTCCGCGAGCT--CGTCGAGCAGGGCTTGTGGAACGACACGATGAAG 49681 Query 95275 AACCAACTGCTACGCGCCAACGGC---TCCGTCCAGAACATCCCGCAAATACCGGAGGAC 95331 |||| | | |||| ||||| ||| |||||||| | || || || || | Sbjct 49682 AACCGCATCAT---CGCCCACGGCGGTTCCATCCAGAACGTGCCCGGCATCCCCGACCGC 49738 Query 95332 ATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCG 95391 |||||| ||||||||||||||| ||||||||| ||| | || ||||| || Sbjct 49739 ATCAAGAAGCTCTACAAGACCGTCTGGGAGATCAGCCAGAAGGCCATCATCGACATGGCC 49798 Query 95392 GCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCC 95451 |||| |||||| |||||||||||||| | | | |||| Sbjct 49799 GCCGACCGCGGTGCCTTCATCTGCCAGTCGCAGTCGCTCAACATCCATCTCTCGGCGCCC 49858 Query 95452 AGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGT 95511 | ||| | | || || ||| |||||||| |||| |||||||||||||||||| Sbjct 49859 ACGTTCGGCCAGCTCACCTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACCGGT 49918 Query 95512 ATGTATTATTTGCGAACCAGGCC 95534 | || || |||| |||| ||| Sbjct 49919 ACCTACTACCTGCGCACCAAGCC 49941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494686516274720