Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 251 7e-62 seq10 114 1e-20 seq67 100 3e-16 >seq4 Length=437454 Score = 251 bits (278), Expect = 7e-62 Identities = 646/971 (67%), Gaps = 17/971 (2%) Strand=Plus/Minus Query 153593 CACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGAT 153652 || ||| || || ||||| || |||||||| ||| |||| | ||||||||| | ||| Sbjct 49063 CAGGGCGATTGAGGCCAGGTTGCAGACGGCAACCTCGTCGGGGGCGCTGTACTCGATGAT 49004 Query 153653 CTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATT 153712 ||||| ||| | |||| ||| || ||| ||| | || | ||| ||||| ||||| || Sbjct 49003 CTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 48944 Query 153713 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAA 153772 | ||||| ||| |||| ||| | || |||||||||| || |||| ||| Sbjct 48943 GGCAGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTGGCACTCGAGGATGG- 48885 Query 153773 CCTATGC-AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCT 153831 | || || | |||||| || || |||| |||||| |||||| |||| Sbjct 48884 CGTACCAGAGCTTCTGCGCCTTGACGGTTCGCTTGGAGCGACCCTCGGCCTCGTAGCGCT 48825 Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGAC 153891 |||| || |||||||||||||||||||||||||||||||| || || |||| | || | Sbjct 48824 CGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGACCTGGGCACTCGTTGGGGC 48765 Query 153892 ACATCAGCGACCACATATCG-TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAG 153950 |||| |||||||| || || || | ||| | |||||| ||||| || |||||| Sbjct 48764 ACATGAGCGACCAGTCGCCGTTCTGC-TCGACCCTCTTCATGAAGAGATCGGGGACCCAG 48706 Query 153951 AGCGCGTACATGAGGTCGCGCGCCTTGCA-ATCCTCCGCGCCCATGTTGCGTTTC--AGA 154007 || ||||| | ||| || || | | ||| || ||| ||| ||| || | ||| Sbjct 48705 AGGGCGTAGAAGAGCTCACG-GGCACGCATCTCTTCCTTGCCGTGGTT--TTTGCGGAGA 48649 Query 154008 TTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTA 154067 | ||| | | ||| || | |||||| || |||||||||| ||| | |||||| | Sbjct 48648 TCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCCGGA 48589 Query 154068 CGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGT 154124 ||| || || ||||| ||||||| ||| | | ||||| |||||||| | ||||||| Sbjct 48588 CGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATGGGT 48529 Query 154125 TCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGA 154184 | | ||| | | |||||||| ||| | |||| |||| | Sbjct 48528 ACGATACCGTTACTGACACCGTTGGTGCCGGCGATGTACGAGCCGGTACCGCGAATGCAG 48469 Query 154185 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCC--CAGCG 154242 || | ||| | || || || ||| || ||| || || || ||| || | |||| Sbjct 48468 TGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGAT--CATGGCACACGTCTTGAGCG 48411 Query 154243 TCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTT 154302 | ||||||||||||||| ||||| | | || || ||| ||||| | | | Sbjct 48410 TGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCT 48351 Query 154303 GCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGC 154362 | || | || || || ||||||||||| ||||| ||||| ||| ||| Sbjct 48350 GTGGGTGTGGTGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATTTCTGGG 48291 Query 154363 TCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGA 154422 ||| | ||| || ||||||||| ||||| || | ||||| ||||| | |||| Sbjct 48290 ACATGAGATTGTAAGTCTCGATGGCGCTCTCGATGTCTTGACCGTGGATGCCAACAGCGA 48231 Query 154423 CGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATC 154482 | |||||||||||||| || ||||| || ||||| | || || | || || Sbjct 48230 CACGCATGAGCATGTGTTGAGGACGCTCAGCGACCTTTCCGTTGATGCGGAGCAGGTAGG 48171 Query 154483 CATTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGG 154542 | ||||| || ||| | ||||| | ||||| | ||||| |||||| ||||| Sbjct 48170 AACGCTCGAGCGTCTTGAATCCGAAGAAGTTGTAGTGGAAATCGCGCTCATAGATGATGG 48111 Query 154543 CCGCATCGAGC 154553 ||| |||||| Sbjct 48110 CCGAGTCGAGC 48100 >seq10 Length=322828 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | ||||| ||||||||| || ||||||| | Sbjct 83704 GACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCA 83645 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || ||||| || ||||| ||| || || | | Sbjct 83644 AAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACA 83585 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||| ||||||| || | || ||||| || || || || Sbjct 83584 TTG-TCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTT 83526 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 83525 GACAAAGATCTGCAT 83511 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | || | | | |||||||| ||||||||||||||| | Sbjct 156340 CCTCCACGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 156399 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| || || || | | |||| || ||||| ||||| || || Sbjct 156400 AAAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGA 156459 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | ||| || | |||||| | ||| || | Sbjct 156460 ATGCCTTCCTTGTC-CTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGACGATTCGA 156517 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | ||| || || |||| || || ||||| |||||||| Sbjct 156518 CCTCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 >seq67 Length=99859 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | || ||||| || ||||||||||| Sbjct 38320 CCACCACGGAGACGGAGGACCAAATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 38379 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || || | |||| || || || || || ||||| Sbjct 38380 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGGCGTTGCTGATCGGGAGGA 38439 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||||| ||||| ||| Sbjct 38440 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCTACC 38499 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | || |||||||||||||| || ||||| ||||||||| Sbjct 38500 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTGACAAAGATCTGCATG 38547 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||||||||| | || || ||| || || || ||||||| | | Sbjct 37899 CTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAA 37958 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| | ||||| ||||| || || |||||||| ||||| ||| || || | | Sbjct 37959 GATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 38018 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||| || || | ||| | ||| || || || || || ||||| Sbjct 38019 GTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTCTTTCCCGTGAGTGTCTTTAC 38078 Query 138603 AAAAATCTGCAT 138614 ||| |||||||| Sbjct 38079 AAAGATCTGCAT 38090 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || | || | | | || ||||| |||||||||||||| | || || | Sbjct 38104 CGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGAGAGGGTGCGGCCG 38163 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 |||||||| || || || | | |||| |||||||| || || ||||| || || || ||| Sbjct 38164 TCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTG 38223 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| || || | | || | ||||| | || || ||||||| || | Sbjct 38224 TCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGACCTCGAGGGTAATG 38283 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||||| || || ||||| |||||||| Sbjct 38284 GTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496225602143040